RNA id: AMCG00006039


Basic Information

Item Value
RNA id AMCG00006039
length 746
RNA type mRNA
GC content 0.47
exon number 4
gene id AMCG00006039
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14647589 ~ 14651753 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGCAATCTCGCGATAGTTGGCGTTCCGGGGTGTCCTTGTCGGATCCGAAATGGGTTACTGGGATCTGCAGGAAGGCAAGGACTGTGTCCAAAAGACATGGATCACTACCAAGCTGGGTACTGCTTTGGGCCTGGTTGGCTCTGCTTATCACATCGTGGCATTCCAGCCTGATTCTGCCATCCAGGCGGTCCAGAGGGCCACATCGGGCACCATGACCATGGCGACTCTTGGGGCCATCTTCGGCATGGCCACCTGTCTGAGTGCCCAGGCCAGGGATGAGCCAGACGACCCGCTCAACTACTTCATCGGTGGCTGTGCATCTGGGATCTTTCTTGGAGTGCGAACTCACAGCTACATGACGGGAACTACAGGCTGCCTGGGGCTGGGGGTGTTGGCTGCGTTAACCAAGATTGGGAAGAAGGAAGGCTGGAGGATAGCGGGATCACCCAAGCTGTAAATGTCTAAAGCAGACCTTATATTGACTTGTAAATTGATTGCtatttctgttaaataaaactatttaaaagagactttgcattacaaaatgattaaataaatgaattagtGCCTTTATCACCACTGGACCCACAATTGGAATGACACAAATGGAATACCTGTATTATTAAGACCTTGtgataatatattgtttgtgtcattttaattgtgGGTTCAGTATTGATCTAGATACACATTGTCTACACCCAGTAATTTGAGTACAATGCAGTGGCTAAAATAAGGGgatttg

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K03956 NDUFA11; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196235 lncRNA downstream 77753 14569562 ~ 14569836 (-) True G155783
TU196218 lncRNA downstream 155660 14489290 ~ 14491929 (-) True G155768
TU196199 lncRNA downstream 222843 14422504 ~ 14424746 (-) True G155754
TU196154 lncRNA downstream 277407 14369761 ~ 14370182 (-) True G155717
TU196137 lncRNA downstream 324475 14318979 ~ 14323114 (-) True G155703
TU196367 lncRNA upstream 328631 14980384 ~ 14981621 (-) True G155899
TU196366 lncRNA upstream 329350 14981103 ~ 14981621 (-) False G155899
TU196378 lncRNA upstream 350657 15002410 ~ 15004191 (-) False AMCG00006102
TU196434 lncRNA upstream 448556 15100309 ~ 15105533 (-) True G155957
TU196477 lncRNA upstream 527298 15179051 ~ 15217634 (-) False G155989
AMCG00006035 mRNA downstream 54219 14589371 ~ 14593370 (-) True AMCG00006035
AMCG00006019 mRNA downstream 97902 14546944 ~ 14549687 (-) True AMCG00006019
AMCG00006020 mRNA downstream 101096 14546180 ~ 14546493 (-) True AMCG00006020
AMCG00006018 mRNA downstream 140201 14492005 ~ 14507388 (-) True AMCG00006018
AMCG00006026 mRNA downstream 189248 14453018 ~ 14458341 (-) True AMCG00006026
AMCG00006036 mRNA upstream 8832 14660585 ~ 14662509 (-) True AMCG00006036
AMCG00006038 mRNA upstream 11805 14663558 ~ 14670355 (-) True AMCG00006038
AMCG00006037 mRNA upstream 29460 14681213 ~ 14682980 (-) False AMCG00006037
AMCG00006057 mRNA upstream 53798 14705551 ~ 14718570 (-) True AMCG00006057
AMCG00006058 mRNA upstream 114242 14765995 ~ 14778085 (-) True AMCG00006058
TU196220 other downstream 137975 14509233 ~ 14509614 (-) True G155770
TU196147 other downstream 306926 14336891 ~ 14340663 (-) True AMCG00006013
TU196074 other downstream 475982 14168090 ~ 14171607 (-) False AMCG00005997
TU195614 other downstream 1792786 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 1975131 12671652 ~ 12672458 (-) False AMCG00005989
TU196273 other upstream 28044 14679797 ~ 14682961 (-) True AMCG00006037
TU196327 other upstream 130878 14782631 ~ 14784006 (-) False AMCG00006043
TU196602 other upstream 781679 15433432 ~ 15436866 (-) True G156088
TU196604 other upstream 837649 15489402 ~ 15491642 (-) False G156088
TU196760 other upstream 1302323 15954076 ~ 15957090 (-) True G156206

Expression Profile