RNA id: AMCG00006041


Basic Information

Item Value
RNA id AMCG00006041
length 3489
RNA type mRNA
GC content 0.52
exon number 13
gene id AMCG00006041
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14819668 ~ 14827527 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caagaacacacacacagaggacagaggagACTGTAGCAGACAGGAAGCCTCTCTCTGGGATAGGGTGGGCGGCTGGGTCAATGTTAGCTTATTTGGTCCCATTAGCATTATGCAAGGTGCCTTGTTTTGACGGAGGTGATTCTGTGCAACTGGGATTGAACTGGAACACTGACACTGCTTAGTCTCTCTGAAACAACACAACTTGGAGCCAGCAACAGAAGGAGAGGAGTGGCCTGAATGATATTAGTTAGCATACAGATGGATAGAGCAGTTAGTGCAGATCTGTACCAGCAACTGAAGGATTTGAGGCCAAAAAAAATAGAACTGCTGCACTGAGTGCCTGTAAAGCTGGCAGTATTTCTCAATGGACACTAAAGACCCCTTAGGAGAAGAAATGAGTGCCCAGACTGATGCGGTTGGTGGGGGCCCTTCTGTGCCTGGGGAAGCTCCAAAATATGAGGATGAGCCTCCAACCCCCAATGTTGTTGACCAGGAGTTGAACCAGTGTGAGCAAGAGGTTGGCGGCTTGCCAAGGGAAATTGCGGAGCTAAACAGGAAACTGGGAAAGCAGCAGAATCCTAGGGACAACAGGGATTCCCATTCCATTCCAGAGCCTCATAGCAGCCCACAGTCCCAGCGCCCACAAGACCATTTAGGCCCACCCTGTGAGGGACCAAACCCTGGGAAAGGTGGCAGTGCTGAACTGTGGGCAGAGCTGCAGGGGGTCCTGGCTGCCCTGGAGAATTCCGTTCAAGGGAGGAAGACTGGGGCTGCCCCAGAGACTGCCTGCGATgaagagagacaaacagagcaCCTGCGGGCTGCCAGGGAGAGCTGGGTCCAGGTCACACAGATCCTGGAGGAGATGGATAGAGAGTTTGGGATCTCCTACCCCTCGGGCCTACCAGATGAGGAGCGCCGCCAGTTTCAGAGAGACGTGCTGACCTACCATCAGAAAAACTGTGACCTCGGTGCAAGCCTGCAGCACCGGGAGGAGGAGCTTAGACGGTCAAAGAGCACACTGAACGCGCTGCAGGAAGAGCGGGAGAGGCTCAAAGCAAAGCTTTTGGGTCTCCAACATATCCTGCAGAGCAAGGGTAGCCTGTCTCCCCCTACTAGCCCCTCTAGCTCTTCCAGTGGAGTCTTTAGCCCCTGCTGCTCCTCTCCAGCCTGCCCTGGCTCTCCCCTGCTCCTGAGACACCCTGAGCGTGCTGTTCCTGCCCTGGCCACAGGGGGCAATAAAGTGTCTTCTACCCCTTCCTCCCCTACTCCTGGAACTCCAGCCTCCCCCAGGCAccagctctccaggaccagcagCTTCGAGAGTGAAACTGAGCGACTGCAGAGGTGCATTGAGAGGCTGAAGTCGCGGAATGAACGTCTGTCTGCAGCTCTGGAGAGGAGGAAAGGAGAGTCAGAGCAAATCAGCATGACACTCAGCCAACACGAGGccaacagcactgcactgcagatGGCTCTGAGATACAGCGAGGAGTGTGAGGAGGCCTACAGCGAGCTGATTTCTCTGTATCAGGACAGGAAGGAGAGGCTGCAGGAAACAGCATGGGCTGcagAGTCTGCCAAAGAGACAGAGCAGCCGCGTTGCACCGACCGTGAACACAGGAGCCCCGAGACAGGGGAGTCCTCTCTTTTGCCACTAGGGGGCACTGTGGATACCAATGAAGCACAACACACTGAACGAAAGGAGGATGCCATTCGGGAGAGGATCCAGAGGCTGAAGCATGACAGGGCGTCGGTATGCGTCCCTGCCACAGAGCCCGATGGAGAAGCCAAACCCAGCCCAGACACTGACACCCTGCCAGGGTACAGGGGCCAGGACTTTGCCAGACCTCACAGCACCAAGACAGAGAAGGCGATATTGTTGCAGGAGCTGGTTACTGTCAGGGAGGAGATGTCAGAGCTGCGGGCGGAGATAAGGCTGGCGGAGAAGGAGAGGCGCTGCCTGGAGTGGACGCTCACGGCTCAGAGGGCACAGGAGGTAGCCAGGGGGCTAATAGCGGGCAGCCTGAGAGAGGATCTGGAGGAGGGGCAGAGACCTCCAAAGCAGGGAACCCCTCTACTAACTGCTAACGAGGGGAACCCCGTACCCCAAAACCAGACCATCCTGAGGGAGATTGAGGCAGCTTTGCAGAGGGAACAGGTGCTGAGGAAGAGGGTGACGGATCTGCGTGGGTCCCTGGAGTCGGTGTTGCTGGACAGCTCTCTCCGCATGAGGCAGAGTGACAAACTGACCGCCCAGCTCCGCCAGGCCAACAGCAGTGTGAACGGTGCCTACAGGTGCGCCCGCAGGAAGTACCGGGAGCAGGTGTGGCAGCTGGAGCGGCAGGTGGTGGCAatggcagagagacacagcaTTCAGATTGGGGGCCTGAAGGGGGCACTGCAAACGCTCGAGTTGAAGAAGGCCGAGGCGAATCTGTAGCAACATCTCATCAAGCCCCTCACTCCGGCTGGGGGATCTGAAAAAGCAGAGTCCGCTTCTAGACTCCTACACACCCAGGCTGCAGTGCTGTACCATCAGCAGAAGAGGGCGCATGGTCTTTGTTTCAGTCCCAGAGTCCAGGACAGACCAAGAGAGGTGTGCGAGGGATTGGATTTCTGCCTGGCATCCTTCCTAGTTTTCATCCGATCTGGTTTTCATCCGAAAGGGTATTGCAGAGAAAATGCTGCCCAGCATATTACCTGGGATGACTTACAGTATTAGAAATGGACCGTGTCTTTGCCATTCACCCGTATTAAGTGACACacaatgtgtgtatttacatgGAGGGTTTGAAGTGTTTGTACTGAATACAGACGGTTTGTTATGCGTTTCCATTCTCGCATTTCTAGTCTTTCAGGGCCATTACAACTTTCATTAaaccctcccccccaaaaaacagtGACTTGCACTGACAATATCAAGACAATGATCGTCTGTACTTTCTGTTCCCTGTGTGAATGATCTAAATCAGGGGTGTCAGagtccagtcctggggggctgcagtgtctgctgttttttttccaacaggagatgccaattacttaattaatgtaattatttaatcaagtatgtttatgtaaaactatcatattcattttttatagcTGATATcttacaatttgttgatgactcaaaacactgaacccacaaaacatttcagagtctggagagactgttaactgttaaattaattggtctaattaaacaattaactggattaagGAGCCAAGATCCAGGCGAAACCAAGCAGAgactgtggccccccaggaaTGGAGTCTGACATCCccagatttaaatgcatttgtaaagaCTTGTTAAGGGACAACAAGATGAACAAAATCAGCTAATAtttcaattcattaaaaaaaaggactgAAACAAAACAGGCAACTCAAGAGCTCTCGTCTGCCTTTGTCTTTGTTATGGGggaaattaattcaataaaataaaataaaataaagaaaaaagcttagagttgaaaaaca

Function

GO:

id name namespace
GO:0035162 embryonic hemopoiesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196295 lncRNA upstream 57940 14760397 ~ 14761728 (+) True G155832
TU196242 lncRNA upstream 136666 14628442 ~ 14683002 (+) True G155790
TU196320 lncRNA downstream 38387 14865914 ~ 14866479 (+) True G155856
TU196363 lncRNA downstream 151778 14979305 ~ 14980490 (+) True G155897
TU196365 lncRNA downstream 153574 14981101 ~ 14981620 (+) True G155898
TU196383 lncRNA downstream 223328 15050855 ~ 15055957 (+) True G155913
TU196399 lncRNA downstream 272793 15100320 ~ 15103379 (+) True G155929
AMCG00006042 mRNA upstream 20813 14796612 ~ 14798855 (+) True AMCG00006042
AMCG00006055 mRNA upstream 63458 14742197 ~ 14756210 (+) True AMCG00006055
AMCG00006053 mRNA upstream 112544 14700791 ~ 14707124 (+) True AMCG00006053
AMCG00006056 mRNA upstream 125080 14686100 ~ 14694588 (+) True AMCG00006056
AMCG00006054 mRNA upstream 138483 14671161 ~ 14681185 (+) True AMCG00006054
AMCG00006040 mRNA downstream 11162 14838689 ~ 14848138 (+) True AMCG00006040
AMCG00006031 mRNA downstream 163367 14990894 ~ 14991358 (+) True AMCG00006031
AMCG00006030 mRNA downstream 191259 15018786 ~ 15041927 (+) True AMCG00006030
AMCG00006093 mRNA downstream 264490 15092017 ~ 15096837 (+) True AMCG00006093
AMCG00006092 mRNA downstream 276016 15103543 ~ 15105489 (+) False AMCG00006092
TU196155 other upstream 436088 14375995 ~ 14383580 (+) True AMCG00006009
TU196053 other upstream 709798 14108173 ~ 14109870 (+) True G155638
TU196052 other upstream 720972 14097804 ~ 14098696 (+) True G155637
TU195694 other upstream 1786260 13025764 ~ 13033408 (+) False AMCG00005964
TU195534 other upstream 2105655 12711778 ~ 12714013 (+) False AMCG00005984
TU196402 other downstream 275929 15103456 ~ 15105567 (+) True AMCG00006092
TU196404 other downstream 279682 15107209 ~ 15107734 (+) True G155932
TU196591 other downstream 750557 15578084 ~ 15584761 (+) True AMCG00006065
TU196746 other downstream 1136906 15964433 ~ 15973006 (+) False AMCG00006107
TU196781 other downstream 1226508 16054035 ~ 16059830 (+) False AMCG00006113

Expression Profile