RNA id: AMCG00006043


Basic Information

Item Value
RNA id AMCG00006043
length 1338
RNA type mRNA
GC content 0.45
exon number 2
gene id AMCG00006043
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14782506 ~ 14784280 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTGTAATTCACGTGTGCGGGTTGGGTTTTGTAGATAGTACATAGGAGTAGctgcattaataatacaataataattcaatttcaCAACGTCAGAATAACTAATTGATATGTTGCCTTTATTGTTAGCGCACTAAATGCCTATTTCATCTGTTAGTTGTTGTTAATGGGATGTAATAAAGGGGCATCTTTCGTAACTACAATTCCCACAACACACCGGGCGCCTATAAGCTACCCTCCCATTGGCTCATTCTCCTGGCCAGTCACAGTTGCGTGTGCTCCGTGTGTTCGGTCTGCGTGAGTTTAGAGTGACATTGCCAAGGAGCAgttgctttaaattaaataattagagaCATAATGAATTTCTTGAGACCGACCTGGCTGTTGTTTAGCGGGATTAGGAGCAGTCCTTCCAGGGTCCTTCTGAAGCCCAGTCCAGTGTCCAGTGCTTCTAATCTCCGACAGGCCAGCGGCTGGATCCTGTCTCGGGCTGCCACTGAGTGTGCGGCCTTCCCCTGGGGCATTGTGGGCCAGGCGGAGGGGGCGGGGGTCCTGCAGCAGCTCCCCTGGCAACACCAGCAGATCCGTACCCGCAAGCGTGGCACGGAGTACCAGCCCAACAACATCAAGCGCAAGAGGACCCACGGGTGGATCAAGAGGATCAGCACGCGGGGGGGCATCGAGGTGATCCTGCGCCGGATGCTCAAAGGGCGGAAGTCGCTCACACACTGAATGGCAAACCCGTCATCGTCCGGAAAACACCACTGCCACTCAGTTTCACTATCCCGAACTTGCTCAGACTCAGCTTGGCTTCAGGGCCAGTGATCTTGACTTGGgatcctgttcttctctcaacaTCTGGAGTTTTGcagctggactggactgtgcaGACACACGTAGGAGGCATTTTCACAAAGGCCTACTTCAGTTCTAAATATTGTCTGGTTTTACATAATAACACCctaaacttttaatttgtaatgcattaCCCAATGAGACCAAGGTTGTGTTGAATGGATATGACCTGAATCAGCCCATTTATACATGAAGGACATGCTGCCCagaatgattgtgttttttgtttttcttgaatggatcaatatttaataaaatattttttccctgaaTGTTTGCGGTTTGACACCTTTACTACTATGTCATCAAAATGGATGATAGCAAATTGCTACAAAAATCTAATCCTCAAATTCAAAGAAATAAGTGTAATATAGTTGTGGACTTTAAATAGTTAtttctaatttacatttttaaaggaagGCTAATTGCATATTTACAGGTCTTTTAATTGTTCTctcaatattttgcatttcgGACTAGTTATAG

Function

GO:      GO:0030529

KEGG:

id description
K02914 RP-L34, MRPL34, rpmH; large subunit ribosomal protein L34

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196235 lncRNA downstream 212670 14569562 ~ 14569836 (-) True G155783
TU196218 lncRNA downstream 290577 14489290 ~ 14491929 (-) True G155768
TU196199 lncRNA downstream 357760 14422504 ~ 14424746 (-) True G155754
TU196154 lncRNA downstream 412324 14369761 ~ 14370182 (-) True G155717
TU196137 lncRNA downstream 459392 14318979 ~ 14323114 (-) True G155703
TU196367 lncRNA upstream 196104 14980384 ~ 14981621 (-) True G155899
TU196366 lncRNA upstream 196823 14981103 ~ 14981621 (-) False G155899
TU196378 lncRNA upstream 218130 15002410 ~ 15004191 (-) False AMCG00006102
TU196434 lncRNA upstream 316029 15100309 ~ 15105533 (-) True G155957
TU196477 lncRNA upstream 394771 15179051 ~ 15217634 (-) False G155989
AMCG00006058 mRNA downstream 4421 14765995 ~ 14778085 (-) True AMCG00006058
AMCG00006057 mRNA downstream 63936 14705551 ~ 14718570 (-) True AMCG00006057
AMCG00006037 mRNA downstream 99526 14681213 ~ 14682980 (-) False AMCG00006037
AMCG00006038 mRNA downstream 112151 14663558 ~ 14670355 (-) True AMCG00006038
AMCG00006036 mRNA downstream 119997 14660585 ~ 14662509 (-) True AMCG00006036
AMCG00006045 mRNA upstream 20465 14804745 ~ 14813651 (-) True AMCG00006045
AMCG00006047 mRNA upstream 66501 14850781 ~ 14851879 (-) True AMCG00006047
AMCG00006046 mRNA upstream 67877 14852157 ~ 14860735 (-) True AMCG00006046
AMCG00006044 mRNA upstream 82429 14866709 ~ 14875721 (-) True AMCG00006044
AMCG00006032 mRNA upstream 104860 14889140 ~ 14907158 (-) True AMCG00006032
TU196273 other downstream 99545 14679797 ~ 14682961 (-) True AMCG00006037
TU196220 other downstream 272892 14509233 ~ 14509614 (-) True G155770
TU196147 other downstream 441843 14336891 ~ 14340663 (-) True AMCG00006013
TU196074 other downstream 610899 14168090 ~ 14171607 (-) False AMCG00005997
TU195614 other downstream 1927703 12843778 ~ 12854803 (-) False AMCG00006063
TU196602 other upstream 649152 15433432 ~ 15436866 (-) True G156088
TU196604 other upstream 705122 15489402 ~ 15491642 (-) False G156088
TU196760 other upstream 1169796 15954076 ~ 15957090 (-) True G156206
TU196870 other upstream 1670089 16454369 ~ 16462159 (-) False AMCG00006083
TU196884 other upstream 1721313 16505593 ~ 16518111 (-) False AMCG00006118

Expression Profile