RNA id: AMCG00006044


Basic Information

Item Value
RNA id AMCG00006044
length 3868
RNA type mRNA
GC content 0.45
exon number 6
gene id AMCG00006044
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14866709 ~ 14875721 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgtgtgtttgttatggGCTGAGGAGGCCaggtttaatgtttaaactGCTTTTCCTCTTTCAGCTCCCTGCGATAAGGCCCCTGAGTCACCTGAAGAGGCAGCCCAGGCCTGCTGTGCGAGAGAAGCCATTTTAACACAGCCCCTCTCCTGCCAGATTACAGTCCACAACCAATTCTCCAGAGCTCCCAGAACTCCAACAGCAAGttctaGTTCTTGCATGCTGAGAAACACAAAGCCCATTTCCGTACAGTTGAAGGAGGTTGATGGATGGTCATTTTCAAAGCATATCTCCACTTCAGTATGGATTGCTCTTGAGCTGTGAATATCTAGACATCTGACTTTCCAAATCCTGTATCAAGAGTAACTCAATCATAGTATGACCTCTGTAGATGAGCCCTATTATCCCAAGACCAGGTTTGAGAAAAGGAGACCAGTCCATGACCCAGTGGAAGATCTGGATGCCACTTTGGCCCCACGAATACAGATTCTACCCTCCAGGCTTTCCGAACGCTCTCCCTTGAGGGTTCAGGATTATGATGACAATGACGACTCTAGCGAGGGACCCCCTCTCCCCAGCACGCCGCCCGTCGGGGAAGTAGACAATGCAGCTAATCAGAAGGAAAATAATCCGTCCAAGAAGAGAACGCTCATACCCAAAGCATGGGGCAACTTCTTCAAGAAATGGAAGAAGGGTGACGGGTTCCAGCAGGATTCATTGGAAGAGAAATTCCTTCCTAATGGTTCCCAGGTCAGCCCACCCATAAGCCCACTCCTGGGCCCGCGATTCGGGGAGCAAGAGGACTCGTGGATGTCCAGCAAGATCTCGCAGAAGCCGCCCCTTACAGACAGCACCGGCACTTACTCCAATCAGGATATGCCGTACCAGGACCCTTTCACAGGGTCAGACAGGACGAGCATCCATCCGGCAGAGTACTACGCAGAGAAATTGGAAGTCTACAACCAGAAATACTCTTACATGAAATCCTGGCCAGGGCTCCTCAGGCTGCTGGCCGGCCTGCAGCTCCTCTTCGGGGGGATGGTGCTCGCCTGCGTGTGTGCCTACATCCAGAAAGACAATGAGTGGTACAACTTTAGTGGCTTCCAAACACCCAGCTACGGGTATGGTTATGGCGGTGGGTATAATTACTATGGACCCATGACCCCCTTTGTGCTGGCTGTTGTTGGCCTGGCCTGGTTGGTGACTGTTATCCTGCTAGTTCTGGGCTTGACAATGTACTATAGGACCATCCTCTTGGACTCCCACTGGTGGCCCCTGACTGAAGCGGTTATCAACCTGGTCCTGTTCCTGCTATACCTGGCAGGGGGGGTTGTGTACCTCAATGACCTGAACCGTGGAGGGCTGTGTTACATGACTGTGGGCATCAACCCCATGCTGTCCACCCTGTGCCGAGTGGATGGGGGCCAGATGGCCGGCACGGCCTTCATCTTCATCAACATGCTGACGTACCTGGTCAGCTTCCTGGTCTGTCTGAAGATGTGGAGGCACGAGGCGAACCGCATGGAGATGGAGGCTTTGGAAAGTGAGCCTCCCCATTCTGCCAGCACAGTCCAGACGAAAACCAAGAAGATTGTGTTTGAGGACAAGATCAACCACTCCATACGGACCACCAAGCGGATTCACTTCTCCGAGCCTGGTGACAACCCTGCCACCCTCAACAAAGCCATCCCTCCTGGATACGTCCCCAAACCCCGGGTCGTCCCTGACTACATCATgAAATACCCTGAGATCCGCTCTTCCGAGGACAGGGATAAGTACAAGGCTGTCTTTAATGACCAGTATCCAGAATACAAAGAGCTGTACAGTGAGATCCACGTGACTGTAAAGAAGTTCGCAGAACTGGACGCCATGTTGGGCAAGGTGCTCAGTGACACAGAAAACCCTGAGGAACACCAGCGAATCCAAAACGTGCTGAGGAAGTACAAGGCCAAGAAGAATGATCCCGCATTCCTGGAGAAGAAAGAACGCTGTGACTATCTGAAGGCCAAGCTGAACCACATCAAGGCCAGGATCCAGGAGTTTGACCGGAAGACTATGGGAGGCCGGCCCTGAAAAGCTTTTCTATTGAATTGACATGGCAGACCTATTGACAGCCTTCCGTACTGACTTCCCTCCATCTACGGGTGTTGATCAGATACTATGCTCTGGGTGAACTGTTCTCTGTCCTTTCCTGGGGAGGTCCAAACAAGTCTATCTTAAAGGCTTTTTTAAGAGTTTCcaaccaacacaaacacatatgaaCAAAGCCAGTAAGATTTCTTATCCAAAGATGCAGAGCTCTGGATCTAAAGCCAGAGAGTGACATTTTAAGGTTTAGATCCAACCCATATAATTTGATTCAGGTCCAAGGCAGTGGGAGATGTCTTACTTAGACACTGATGTTTTACTGCAGATACTATAGGCTGTGTAATCtctatattttatacataattacatcTGTACATGTAGCtcttttataaaacatattcatTGTTTTGACTGGTTTTAGAAGGTAGTAATAAAACTGACCAAAATAAGTACTTGGGACCAATAGGTGGcgttttctgtatgttttttatgcGTGTCAATGCTTGTTCTATGCAGAGAATTGTAACCACGTGCTGAAAATATGTGATTTGTGTGTAAAGTTTTGTACATGCTTACTGCAACATGTTTTAAGGAGGCTGAAGAAGTGAGATAAAAGGGGAGGCTGTAAACTTCTTGATCATGCTGCCGAAATAGTCAATCTGTTCCTCCTAAAAGTTGCAGAAGTcgattcatttatttgtttaagtcAGTGCTAGTAAAATCAAATCATGCTGGGCTTTTTGGGACTTCAAACTGTCCTCTGACAAAGATtgtattgaaatgaataaaaaagtGCAATCGTAGTTTTAGTTTTGGTGGTTATCAGGTCAACACAATGTCCAGTTTGGATTTAATTGCTGGGGCATTCATTTATCCCATCTCATCTAACATCAGGAGGCCTAGAAAGATGGATTCTGTAGGGAAAGATAATTGaccaattaagtcattaattaGTAGGATTAGGTACTGACGAACTCAGGGTGGAACAAAAACCTACAGCAAGTGACAAATATCATTCCAGGGAAATTGTGaatcttaaaatgaaatatatttagcatttcatcttatatataaataaagtttaaaatagGTCAAATAGTAACATTCATCTACTTCAAAAAATTAAGGTAGGAGATCTGAAGAGACTGAGGAGGTGATTTTCTTTAAGCTTTTTTCACGGTACTGATGTAGCGAAAGACAACACAAATGTagaaaaaattatatttcaccACATATGTAAACTGGTGTTCACAAAAAGTGGACCtggtactgcactgcacaatcaAATACAACTGCTCTTTGCTCtggaacacattttattttcatgctcTATGAAAACACAGACCTAATTATTAtatgtgtgaatatatttgtAACTGTGTTCATATTTTCTATATCTATTAAACATTGTTGATACAATCCTAACGTTGACGAAACCATTTGTTTGAGTTTCGTAGTTTCTAATCCTTATTCGTAACTGTGGAGCAGATAGTAACATGAAGCATATCTCCACAACTTCACTCCTTCAACCTTCACGGGCCTTGAAACATTCGACGTCTTCCGTTTAAGTGTGCATCTGAACAATGCCTCCATTCCCAACTGTGtatcctgttttcttttcacttccCTACAACCACAATAGGCCTCTTTAGAAATCCAAGATGAAGTCActtaagaattgtatttatttattttttatcaagcTTCTGGTTTGTCCACTATTGGATTAATCCGTTCTTTTccaaaaatgcttttgttgttggtctttttttatatactgg

Function

GO: NA

KEGG:

id description
ko04976 Bile secretion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196235 lncRNA downstream 296873 14569562 ~ 14569836 (-) True G155783
TU196218 lncRNA downstream 374780 14489290 ~ 14491929 (-) True G155768
TU196199 lncRNA downstream 441963 14422504 ~ 14424746 (-) True G155754
TU196154 lncRNA downstream 496527 14369761 ~ 14370182 (-) True G155717
TU196137 lncRNA downstream 543595 14318979 ~ 14323114 (-) True G155703
TU196367 lncRNA upstream 104663 14980384 ~ 14981621 (-) True G155899
TU196366 lncRNA upstream 105382 14981103 ~ 14981621 (-) False G155899
TU196378 lncRNA upstream 126689 15002410 ~ 15004191 (-) False AMCG00006102
TU196434 lncRNA upstream 224588 15100309 ~ 15105533 (-) True G155957
TU196477 lncRNA upstream 303330 15179051 ~ 15217634 (-) False G155989
AMCG00006046 mRNA downstream 5974 14852157 ~ 14860735 (-) True AMCG00006046
AMCG00006047 mRNA downstream 14830 14850781 ~ 14851879 (-) True AMCG00006047
AMCG00006045 mRNA downstream 53058 14804745 ~ 14813651 (-) True AMCG00006045
AMCG00006043 mRNA downstream 82429 14782506 ~ 14784280 (-) True AMCG00006043
AMCG00006058 mRNA downstream 88624 14765995 ~ 14778085 (-) True AMCG00006058
AMCG00006032 mRNA upstream 13419 14889140 ~ 14907158 (-) True AMCG00006032
AMCG00006033 mRNA upstream 44682 14920403 ~ 14931385 (-) True AMCG00006033
AMCG00006096 mRNA upstream 106080 14981801 ~ 14992261 (-) True AMCG00006096
AMCG00006102 mRNA upstream 122779 14998500 ~ 15007979 (-) True AMCG00006102
AMCG00006103 mRNA upstream 155266 15030987 ~ 15031803 (-) True AMCG00006103
TU196327 other downstream 82703 14782631 ~ 14784006 (-) False AMCG00006043
TU196273 other downstream 183748 14679797 ~ 14682961 (-) True AMCG00006037
TU196220 other downstream 357095 14509233 ~ 14509614 (-) True G155770
TU196147 other downstream 526046 14336891 ~ 14340663 (-) True AMCG00006013
TU196074 other downstream 695102 14168090 ~ 14171607 (-) False AMCG00005997
TU196602 other upstream 557711 15433432 ~ 15436866 (-) True G156088
TU196604 other upstream 613681 15489402 ~ 15491642 (-) False G156088
TU196760 other upstream 1078355 15954076 ~ 15957090 (-) True G156206
TU196870 other upstream 1578648 16454369 ~ 16462159 (-) False AMCG00006083
TU196884 other upstream 1629872 16505593 ~ 16518111 (-) False AMCG00006118

Expression Profile