RNA id: AMCG00006045


Basic Information

Item Value
RNA id AMCG00006045
length 3060
RNA type mRNA
GC content 0.58
exon number 10
gene id AMCG00006045
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14804745 ~ 14813651 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGAAAGTGGAGGCCCTGCTGATACAGAGGGCGAACCCCAACCTGGTGCTGAGCAAGGGGGCAGCGGCCGTCCATCTGGCTGCAGGAAAGGAGACGGAGAAACGGATCCGCTGCCTCAGACTCCTCCTGCAGTATGGCGCTGACCCCAATGTCAGATCTGTGGATGGCCTGACCCCATTGCACATCGCTGCCCTGTGGGGCTGTTACCAGAACCTCAAACTTCTTCTGCAGAATGGGGGAGACGCCAACCTCGAAGACCAGGACGGGAATAAGGCAGCTGATTTGGCAGACGAGCAGGAAAATCGCAAGTGTgcccagctcctgcaggaataCCAGAGTTACGGTCTTGACTGTCCTGAGGGGCCACTCAGCAGCACACGGAGGTCCTCGCAACACTCCGCCTATTTGAACCTGTCGGCAATCAGTGCCAGGCCCAGCGTGGGAGGGCGGTGCCGACGGTTGGGGCAGTCTGACCTTTCTGATCTCGCCTGGCGTCACACCCAGACCTGGAGGAGGGATTCGGAAGGGGGCGGGGAGCCTCAGTCGGTGTTGTCCAGCACTCGGATTTCAACAGCTGGCGGAATCGGGGTTCTGCCGGTGCTGCAAGAGGACCTTCCCCTTTCCAACTGCTCGTTTCATCCTAAACCCTTGGAGCTGTCGTCTCTCCCCAGTAACCCCGAGCCAGTGGATTCTGTCTGCTCTTCTCGCCGTGCCAGCCGAAAGAGTGTGAGCTTCAAGGAGGGTCATGAATACTTCCCTGCTACCAGCGCCGAGTCTCACTCGCAGCCTCCAACTGAGGAGAGTTCTCCCGCAGCGGATGAGACGTTTGACATCTCGGAATACTCTGAATTCTTGGACTTGGAACGCATGGCTACCGTCTTGAACTTCCAGGGCATCGACGTGACGTCCCCTGATCACGTCTTTGTGTTTTCGCGGGATTCTGGCTCTGTCAGTCCCGACCTGGACAAGACTCTGGTGGGACACTGGCCCATAGAAGAAGAGGAAGCAGATGAGGAACCAGAAGAGATTGACACTCCTGTTCAGCCACCACCTTGTAGTTccagcagcagcggcagcagtGGCAGCAGGTATAGCAGCTGTGACAGTGAACCTTACACGATTCCCCAGCAGGACCGCATCGGAGCTGACGTGCTGGAGAGCATGGAGGAGAGCCTTGCAGATACTGTCCTAGTGGACCCAATCCACAATGAGACAGACAGCTGTCTAAGTGCTGACGAGGAGCTGGCCAGGCAGATCCTGCTCTCTTCGAAGCTTCAGTCCACAAGCAGAGCATCGGAGGAAGAAGAGCAGCCACTGATGCTAAGCCCCTTCGTAACAGGCAGAACCAGATCCCGTCTGAGTCGCTGTTCTCTGAGAGCAAACGGCAGTTCCATCCTCTCGTCTCCCTCCTTCCTCTTTGATGAGACTCTACCCACACCCACACGCCTCCGCCGCCGCACCACTAAGAAGCATGGTGATGAGAGGCTGAATTCAGATGGCCTTGGATCGTCTTTGAGCAGTGAGTTTGAGAGCAGCGGTCAAACCCAAACTTCTTTGCTTGAAGGAAATTCGATTATGGAAGGGGGTGGCAGTCAGGATGACACTGTCCTGATCCCTGGGAGCCTTGCCGACACTGTGATCctggagagagaagaaagcagTGAAGATGGCATCACAGACTGCCTGGCAAAAGGGGTCGCCCATGCAGTGCTGGGAGACTATGGTGGCTTCGTTACTGATGACCTATCCAGTTCAGGTGGGGAAGGGGCAAAGTTGAGACTGAATGTAGGTCAGTGTCCACCTGGGGCGCCCAGAACGGGAGAATCCTGGGTAAGCGATGACCTCGAGTCCAGTGATCCCCAATCTGAGGGCAAGGTGGTTGTGGAGGGTTTGGCAAAGGGGCAGATGCCAGATTCCTGTTCCAGTGATGACTCCCCAGAGTCTCAGAGGGATCTGCCCGCAACGCCAGGCGCTGGGTATACCCCGAGGTACAGCGTCAGCCGGCTGTCTGCCTGCCATCAGCCCCAGAGACTGGCCGATCTCTCCTACACTCCAGGCGGGCGCCCCCTCATCCCGGAAGTTGAGGAGCCGGTGGAGTACCTCTACACTGACACGGAGGAGGGTCACGAACTGATCGAGTGCCACGTGCCACCCACAGCCAATCACACCCTCTCCTCTGACGTGACCTCGAGTGAGGACACTGTGCTTTATGACTGGAAGTCCTTCCATGCCAGCCCAGGCAAGGGAAAGGAGAACCAGCTGCCTCAAGAGGAAGTCCCATCTGCCATACACAAGCTGCCCGACAGGGAGCTCCGACGCCAGCTGCAGGAGCTTGGGGAGGAACCAGGCCCAATCAACAAGACAACCAGGCTGATTTACATGCAGCAGCTTTGTCGTCTGCAGCACAAGCAACCGAAACACAACCCAGGATACAGTCCTGAGCTGGCCGCCAGCATGCACACCTTCCAGCTGCCCGACTGCCGAGCACACGAGTTAGCCCTGTGCCAGCAGTTTGACCAGCCGGACCAGAACCGGAAGTGGCGAGAGGGCGTGATCAAGTCCAGCTTCAACTACTTGCTGCTCGACCCCAGGGTGACGACAAACCTCCCATCCCGCAGCGTGTCGATGCACCCCGCCGAGTGCTTCCAGACCTTCATCAAGGCCATCTTCTATGTGGGCAAGGGCAAGCGCTCCCGGCCTTACAGCCACCTGTACGAAGCTCTGGAGTACTACAGAGGAGACAGGACTTCCAAGAAGCTGTGCTCCAAGGTGCAGCACATCCTGCAGGTGTGGGCCACTGGCCAGGGCGTGATCTCTCTGCACTGCTTCCAGAACGTCATCCCAGTGGAGGCCTACACCCGCGAGGCTTGCATGGTGGATGCCATGGGGCTGAAGATGCTGACCAATAAGAAGCGAGGAGACTACTACGGGGTAGTAGCGACCTGGCCAATGAAACAGAGGCGTGAGCTGGGGGTGCACCTGCTGTACCGCGCCATGCTGATCTTTCTGGCTGAGGGGGAGAGGCAACTGCGTCCGGCGGACCTCCGAGCTGCCTAG

Function

GO: NA

KEGG:

id description
K21411 ANKLE1, LEM3; ankyrin repeat and LEM domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196235 lncRNA downstream 234909 14569562 ~ 14569836 (-) True G155783
TU196218 lncRNA downstream 312816 14489290 ~ 14491929 (-) True G155768
TU196199 lncRNA downstream 379999 14422504 ~ 14424746 (-) True G155754
TU196154 lncRNA downstream 434563 14369761 ~ 14370182 (-) True G155717
TU196137 lncRNA downstream 481631 14318979 ~ 14323114 (-) True G155703
TU196367 lncRNA upstream 166733 14980384 ~ 14981621 (-) True G155899
TU196366 lncRNA upstream 167452 14981103 ~ 14981621 (-) False G155899
TU196378 lncRNA upstream 188759 15002410 ~ 15004191 (-) False AMCG00006102
TU196434 lncRNA upstream 286658 15100309 ~ 15105533 (-) True G155957
TU196477 lncRNA upstream 365400 15179051 ~ 15217634 (-) False G155989
AMCG00006043 mRNA downstream 20465 14782506 ~ 14784280 (-) True AMCG00006043
AMCG00006058 mRNA downstream 26660 14765995 ~ 14778085 (-) True AMCG00006058
AMCG00006057 mRNA downstream 86175 14705551 ~ 14718570 (-) True AMCG00006057
AMCG00006037 mRNA downstream 121765 14681213 ~ 14682980 (-) False AMCG00006037
AMCG00006038 mRNA downstream 134390 14663558 ~ 14670355 (-) True AMCG00006038
AMCG00006047 mRNA upstream 37130 14850781 ~ 14851879 (-) True AMCG00006047
AMCG00006046 mRNA upstream 38506 14852157 ~ 14860735 (-) True AMCG00006046
AMCG00006044 mRNA upstream 53058 14866709 ~ 14875721 (-) True AMCG00006044
AMCG00006032 mRNA upstream 75489 14889140 ~ 14907158 (-) True AMCG00006032
AMCG00006033 mRNA upstream 106752 14920403 ~ 14931385 (-) True AMCG00006033
TU196327 other downstream 20739 14782631 ~ 14784006 (-) False AMCG00006043
TU196273 other downstream 121784 14679797 ~ 14682961 (-) True AMCG00006037
TU196220 other downstream 295131 14509233 ~ 14509614 (-) True G155770
TU196147 other downstream 464082 14336891 ~ 14340663 (-) True AMCG00006013
TU196074 other downstream 633138 14168090 ~ 14171607 (-) False AMCG00005997
TU196602 other upstream 619781 15433432 ~ 15436866 (-) True G156088
TU196604 other upstream 675751 15489402 ~ 15491642 (-) False G156088
TU196760 other upstream 1140425 15954076 ~ 15957090 (-) True G156206
TU196870 other upstream 1640718 16454369 ~ 16462159 (-) False AMCG00006083
TU196884 other upstream 1691942 16505593 ~ 16518111 (-) False AMCG00006118

Expression Profile