RNA id: AMCG00006057


Basic Information

Item Value
RNA id AMCG00006057
length 4180
RNA type mRNA
GC content 0.49
exon number 9
gene id AMCG00006057
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14705551 ~ 14718570 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAAGTAAGCGTGTGTGTAGCGAAGGAGAGGTCTATGGAAGGGGTCGAAATGCGTTATAATTGCATAAAGCGTAACCGTATTATTTTGCAGCAAATAGTTTATGCATGAAATCGGCAACTAAAGAACCAACTATACAGATTTCCTTGTAAATCGCTTGACTTGACTTCTTACAATGGAAACTTAATTCCGGAAAAACATTTGACAGTTTACTTATATTTTAGACACAGGAATACATAAAATCAACATAATTAcgtttttaaaacagaaataagctTATGATGACGTAtgatgttgaaaataatattcgGAGCGCTTGGGAGACCTTCCCAGTCCTATATTCCCATGGGTTTAAGAACCTTTTTGCTGAAGCATCCGAGCAGGACGCTGTCTGATGCCGACACCATCTTCGCCCTGTCCTCCGGCCACGGGAGGTGTGGGGTGGCCGTGGTACGGGTCAGTGGCCCCTGCTCGGCCCTCGCTCTCTGCAGCCTGGCCGGCCTGAAGCACGGCCCCCCGGCCCCCAGGATCGCTGTCCTTCGTAGCATCACCGACCCGCGCTCTCAAGAGCTGCTCGACAGGGGGCTTGTCCTCTGGTTCCCAGgtCCTCACAGCTTCACCGGTGAAGACAGCGCAGAGTTTCACATCCACGGGGGTCCGGCTGTCCTCACTGGGGTCTTGCAAGCCCTTGGCAGCCTGCCGGGCCTGCGTCCTGCTGAAGCCGGGGAGTTTACCAGACGTGCTTTCCATGCGGGCAAACTGGACCTGACTGAGGTGGAGGGGCTGGGGGACCTGATCCATGCTGAGACGGAGGCCCAGAGGAGGCAGGCGCTCAGGCAGATGGCAGGAGACCTGGGGCGGCTGTACCACACCTGGAGCAAAACGCTCATGAGGAATGTGGCTCACGTCGAAGCTTTCATCGACTTCAGCGAGGATGAGATGATAGAAGATGGCGTTTTGAATGAAGTGGACAGCTCGGTCTCGCGGCTCCAGTCTGACATCGAGGGACACCTGAGGGATGGACGCCGGGGAGAGAGACTGCGCAGCGGGGTTCACGTGGTCATCGCCGGGGAGACGAACGCCGGAAAGAGCAGCCTTCTCAACACCCTGTGTCAGAGGCCGGCAGCCATCGTGTCCCCCGTGGCTGGGACGACCCGGGACGTGGTGGAGACGTCGCTGGACATTGGGGGGTTCCCGGTCTTACTGAGCGACACAGCTGGCTTGAGAGAGGCCCGAGACAGCGTGGAGAAAGAGGGGGTCCGACGGGCCAGAGAGAGGGTGGAGCAGGCAGACCTGACGCTGGTAGTGCTGGACGTGAGCGAGCTTCCCCAGGACCAGAAGAAGGCCCACCCTTTCCTCACCAGCTACCTGAGAGTTGTGCTCGGCCACGGCGAGGACCCGGGGGCCGACCCTAGACGCTGCCTGCTGGTCCTCAACAAAACAGACCTGCTGACAGGAGAGCAGGTGGACAGTTTGCAAGGGGTCCTCAGTCAGAGTTCGGGACTGCCCCCCATCTGCCTGCTATCCTGCCAAACGGGGGATGGTTTGGAAGGCTTCCTGGAGGTCCTGCAGAAGGACGTAAAAACCATGTGTGGAGACCCTCTGGCCGGCGCTCCCAGTCTGACCCAGGCCCGGCACCGCTCTCACCTACAGCAGTGTGTCCAGGCCCTGGCACAATACCACCAGTACAGGGAATTGGACCTGGCGCTGGCGGCACAGGGACTCCGGCTGGCACTCACCAGCCTGGGAAGGATCACCGGCAGGGTGGGCGCGGAGGAGATCCTGGACATCGTCTTCAGGGATTTCTGCATCGGCAAATAGGCTGCCAGGGCCGAGGGCGGGCTTACGCACTTCATAGAGGTGCAGTTGGCACTCACCAGACTGGACCACTACGGCTGTAGGTCCGCAGAACTTCTACTCCAGTTTCTCAGCCCATTGAACGGAGGTTGGCTTTGGTGAAACAGTCTTGACCTCCAAACAAAGAGAGCACTCATTTTTTTTGTGCAGGGAGGGTATTGTCCTCCCAGATGTGCAGGAAAGGGCATCGGAGTGACCTCAGGCCCCTTTGTTTCCCTGTCAATCCGGCCTTGATTAAATATTCCTGCTTCCTTGAACCTATCCCCCTTTCTCAAGTTGTTTCTCACCCCCCCCAGCAGCCCAGCTCTTCACATTCTCCTCAAATCTTCCTCCAATTCTTCGCGATGACGTCATTGTTTGATCTCCTGGTTGATTAATTGGCCGACTGTGGCGAGAGGATTCGACAGACAGCAGCTGCTGTTTTCACCAGCCTCTGAGTCCTGAGCAACGTCGTGGAAGAactttgttgttattattcataCAAAGAGGTTTCATTTATTATCACCATGGCTCCCAACATCAGCCATTTCCCTATAGTTATTTaagttaaagagaaaaaaagttgtaGTTTGTCGCTTTCCAAGTCGTTCATTGATCAAGATCGATTAACAACATTTAAGAGCCCGAATATGAAACAGACAAATCAGACCCTGTTCCAATTAAGACCTTCACAACAATGCAAATATAGAGATTACAACAGAATATTAACAAGTTTCTCCGTTGTACAATCATCTGGATATATACAAATTATGGGACATAAAGAtgtttagtttattaatttaatatataattaatatatatttaaaacgaTGTTAATAACTGAATATACTCCATTAGTAGACCTTATTTGTGTTCTTTTCTCGCAAATGAACgttatttgaaagtatttttatatgtcTATCAAAAATTGACAAAAGGTGAATAAGTATGTGGGTTTACTCGATTATGATTCAGGATAAAGATTTATCTAGACACAGTGATATATACCTTAGATCAGTTGTTCTCAATCCTGTCTTGGAGAACCCccaaccctgctggtttttgttccaaccaagctctcaattatttaattgaacccttaatatGTGTGgcatatatttaaatggaaaagtgTCTCAATAAAGTGTATAATTTCAGCCGAATTCTACTCCATTCCCTTAGTTATGTAATTGGTTAATCGGCTTCAAGCATAACACAAAAGCCCGTCATAACAAGaactaaaaaagaaatatgaagCTAGGGGTTATCAGCTGTATATTCAAAGGAAGGTGATGGCTGGATGTGGTCTTTATTTTGGAAACACGGGTTTCAGACTTCAACACTGACCGCTAAGGGTGATTCCCATGGAGGCTCTCAGTACCAGGCTGGGGGCCCGGCGCGAGTGGCGTGCGTGggttgccttttgtttttgtttgcagtgCCCTCAGCCCTGGAAGGGGCAGTTGGCTCTCTGGTGGAGTTAAACAAAGGATATCCTGAGAACCGGAGCATAGAGACTCCTTCACCTGTCATTTATCAAGTGGCGCCCAACTCTTCATGGAAAATGTGAACGTTTGTTTACCTCCCCTCCCATCCTCAGAATCCTCTGGTTCTTTAGGAGATGAGGAATAAGTGTTTTCCCAACAGTTACTTAAACCTGCAACGCCACTGTGCGTACACTAGGAGTGACAATTACCATTGGGAGTGTTTTGAGTATGTGCTTGATGTAAGAGGGTTCCCATTGAGACAAAGAGATAAACAGATTAGATAAACATGCCACTGAAGTCTTCCGTAAACTGTCCTGCGTGGCCAGTGAGGAAAGAggcttttgtgttttcctcAACAACACGGCAGTTTACAACGGAAGACCTTGTAAGTAGAGCAGGTCTATTTTAATGCGGTTGTGCGCAATCGGGGGGTCAGATTAATGTTTGGATATGTCTCGTCACCGTCCAACtctttaaaattgtgtataCAGACACCTTGTTCGGAGCCTGTGTTGATGGGACATCCGTGTTCTCAATTGCATGGGAagtattgttttcttctgtaaacACCGGAGTTTGTGTACCTCCCTCCCATCCGTCTCTCTTGGCCCTCAGACAGATTCATATAaacattttgtactgattgGCTTGCGAGCAGTAAACTGTACCTTTCCTCTCAAAAACCACTAAGGTGTAGGAAACTGggatctgcaaataaataaaaaatcaatggGTCAAGGAGATGTTACTGTAGTGATTTTATCGGAGGCCTTCGAATCAAAGGGTTAAAGTGAAGATTGAAGACTACAGGACTGCAggacagtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgt

Function

GO: NA

KEGG:

id description
K03650 mnmE, trmE, MSS1; tRNA modification GTPase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196235 lncRNA downstream 135715 14569562 ~ 14569836 (-) True G155783
TU196218 lncRNA downstream 213622 14489290 ~ 14491929 (-) True G155768
TU196199 lncRNA downstream 280805 14422504 ~ 14424746 (-) True G155754
TU196154 lncRNA downstream 335369 14369761 ~ 14370182 (-) True G155717
TU196137 lncRNA downstream 382437 14318979 ~ 14323114 (-) True G155703
TU196367 lncRNA upstream 261814 14980384 ~ 14981621 (-) True G155899
TU196366 lncRNA upstream 262533 14981103 ~ 14981621 (-) False G155899
TU196378 lncRNA upstream 283840 15002410 ~ 15004191 (-) False AMCG00006102
TU196434 lncRNA upstream 381739 15100309 ~ 15105533 (-) True G155957
TU196477 lncRNA upstream 460481 15179051 ~ 15217634 (-) False G155989
AMCG00006037 mRNA downstream 22571 14681213 ~ 14682980 (-) False AMCG00006037
AMCG00006038 mRNA downstream 35196 14663558 ~ 14670355 (-) True AMCG00006038
AMCG00006036 mRNA downstream 43042 14660585 ~ 14662509 (-) True AMCG00006036
AMCG00006039 mRNA downstream 53798 14647589 ~ 14651753 (-) True AMCG00006039
AMCG00006035 mRNA downstream 112181 14589371 ~ 14593370 (-) True AMCG00006035
AMCG00006058 mRNA upstream 47425 14765995 ~ 14778085 (-) True AMCG00006058
AMCG00006043 mRNA upstream 63936 14782506 ~ 14784280 (-) True AMCG00006043
AMCG00006045 mRNA upstream 86175 14804745 ~ 14813651 (-) True AMCG00006045
AMCG00006047 mRNA upstream 132211 14850781 ~ 14851879 (-) True AMCG00006047
AMCG00006046 mRNA upstream 133587 14852157 ~ 14860735 (-) True AMCG00006046
TU196273 other downstream 22590 14679797 ~ 14682961 (-) True AMCG00006037
TU196220 other downstream 195937 14509233 ~ 14509614 (-) True G155770
TU196147 other downstream 364888 14336891 ~ 14340663 (-) True AMCG00006013
TU196074 other downstream 533944 14168090 ~ 14171607 (-) False AMCG00005997
TU195614 other downstream 1850748 12843778 ~ 12854803 (-) False AMCG00006063
TU196327 other upstream 64061 14782631 ~ 14784006 (-) False AMCG00006043
TU196602 other upstream 714862 15433432 ~ 15436866 (-) True G156088
TU196604 other upstream 770832 15489402 ~ 15491642 (-) False G156088
TU196760 other upstream 1235506 15954076 ~ 15957090 (-) True G156206
TU196870 other upstream 1735799 16454369 ~ 16462159 (-) False AMCG00006083

Expression Profile