RNA id: AMCG00006058


Basic Information

Item Value
RNA id AMCG00006058
length 4938
RNA type mRNA
GC content 0.42
exon number 5
gene id AMCG00006058
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14765995 ~ 14778085 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGACACCGAATGTCGTTTGTAACCAATGAGAGCGCACAGTTCCCGGGCAAGCTCAAGCAAATTAGGGCGGACTTCTTGAAGGGCCTTCCTGTCTACAACAAGAGCAATTTCAGCCGGTTTCATGCAGACTCCGTGTGCAAAGCATCGaacaGGAGACCGTCTGTGTACCTCCCCACACGAGAGTACCCCTCTGAACAGATCATCGTCACTGAGAAGACAAATATTCTCCTGCGCTACCTTCACCAGCAGTGGGACAAAAAGAACGCAGCCAAGAAGCGGGAACAGGAGCAGGGAGAGGGCGAGAGTCCCGCGCCCCCCAGGAAAATCGCCCGAACGGACAGCCAGGATATGAACGAGGACACTTAAACAGCCTGGGGCAGCGtgttacacactcacacacccactcacacactcactcactaacacgcacacatacagGTACACTTGTACAAAGGCGCatttacagacacacacgcacgcacgcacacacatcgACGGAGAAGACGGACAATGGGGGGAGAGGCGACCAGGACTTGGGAAGGACACCTAgcctaattttatttaattttttgttgtttttgttcctttctgGCTTTTTTGTGTTACTCTTTGCAAAGGCTTCCTGTCTGTGGTCTCTCACCCGCACTGCTCAGCTCTGGACAGAAGTGGGCGACGCATCACCCCACTCAACTACACTTCCTGTTGGACTCCCAGCCGTCCTCTCTCTAAATGGTTGTCACAGGAGAGCTACTCGGAAAAACCTCAACATTGTGtcagcatatatatacacttgtatatatgtatatgttttgtttcagttttgtttttttaaaccttgttTGCGTAGTGAAGGCTCGTGCTTGCTGTAGCAGATGTAGAGATTTGTGGtaaggtttttctttttgcgttttgtttttgacGTGcggcttttaatttaatcaagcTCAGGCTACGTAGATAAGTGTGCTGGGTTGTCTGTTAGCTTAGCTTGGATGTTTTATGACAAGGgggcaaaaacagaaaaggaggagaggaggcgGGGGTGAAATGTGAGGTGGAATTTGTTGCCAAACGCTTTTTGTTCGATGTAGTGAAAGACTGTTTAGCTCTTCCATAATGTCTGTGTTCATTTCTCAAATCAACCACACCATGGGAGACAGTCTGGATTCCTGGAGTCTTTTGATAAAAGCATGATCACCCCatctactttattttttattttttataccgACACCTGTATTTAAAGAGAGTACTGTGACAGAAATGTCCTGTGGGAGTTACTACTTTTTAATCTGGGGATTTTTGTGCTCCTCCGTTAGGTTAGACACTCAGATTAAACCTCTTGACTTTCGTGATGATCTGAGAAGTGTTTGCGAAGCTATCCTAAGGAAGCCGTATAGTAGATTTTGAAGCAGGTCACAAAGTGAGACTTGCTAATATGTGTTCCCACTGTAGTCAAGTCAAGGTTTCACTCCTAGATTGTATGATGGACAGTGGTGGTAAGGATGAGTAGAAGACCAATAGGATGCCTAGATCGTAATGTTACATGGACTTTGagtgacacaaaataaaaccagaagaTCCATGAAAGATGTGGCTGATTGGGAACATTCTCCTCATGACCGTGTTATCTTCTATGATCTTCTATAGTCTTTGTTTACAGTGACCTAAAAGTTACCAATGAATGAGTTCTTCACCTTCCAGTTTAGACCAACCTGGATCCCCATTCAACTCTTCAGCTTGGTCTCCTTCCTGAGCTCAGATCCCATCCTCACATCTGCCCTGATGTGCTGCGGCTGGCACAGACTGTTATTCCTTTCGGACGTTgacatttggttttaattgttttaggtCAAGCCCTTTCTCTTCGGAAGAATCCTAAGGTcgtgtgtaataataataataataataataataaagaaaaataaatggttgtaaatgtattcaatgtgtGAATCTAAAGATGAATATTGGGATTTGATGTTCAACGCCGCAGAGGATTATTGAAGTTTGGAGTACACCTGCTGGGCAATGCCTAGAGACTCCCAACGATCTGCACATTGTGCCTATTTATTTAGTGTGCGGACGGAGAGCCGAGACCTTCACGTTGTCCCAGACAGGTTGatttataattgattaattttaatattcagcCGACACTCACAGGCTAAAGGATGCAGAAGAAGGCATGCACCAAACTTGAAGATCTCTACACTTTGTCTTTGTGGTTGAACAAAATTGACATATTTCACCCTTATTAAATCCTTGATCTTGAGGTAAACGAATGCAGAAAACCCTAGAATTGTGGGATCCGGTACAGTGGATAAGAAGCTACCCCACCCTCTTAAACAGTAAGGAAGGATCCGATTTCCACGATCCCATTGAAGACCACCCTTTCAGCAACCTTGGACAGATCTTTAGAAGGCAGTTGCATTATGGCCAATGTGGTCAAAGCCCTATTTACCCAACCCTATCGATCATTACGCAAGAGCCTTGAATTCTCTTAGGTTGTGGGTTTTTTTCTGGTGGAAAAGGAAATTCTGTCAACTGACTCAAGTCCCAATGAAGTCAGAGCTGCTGGGCAAGAGTGGGATGGGCTTTTTGCTAAACTTGTCCTTTATGCAATGTTTGGGCTGTCGACTATATCATAGTAGTCATGGCtacttttaatttgtaatcCTAATCATGCCATACTGTTCCCATGGAGTATTTGAAGACTTCAGTAGTAGGTGGGAAGTGATTAGATCAAGCAGTGATTGGTGGTGGGGTCTTTGAGAGGCACGTTGGTGCTGATGTTCCAGGACTGTAAAAGTTCATTGTGCTTGCGTTCCATTGCAAGACAAGTTGTCTgcttcaaaatatgaaaaaatattatatttagatCTGCATTGGAGTCGGTTTTTGATTTCCTGTGCATGGACCAAAAAGCATGCAGTGGAAAAGCATTTTGGTTCCTGTAGGGAAGATTAAATGTTCTACTTTAGGGAAAATTATGATCTACATGGAGTGGTTTATGGGCCACTTATACCTCACCATTAATCCCATTCCCGCCCAAGAAGCTACTAGAACCTAAACTGTTCAACAAAGGCACAATCTGAGGACATAAAAACCAAAGTGGTTGAAGGGATCGCTGCTCTCCTCTTTACATCAAAGTACTTTTCTAAGCTGAGACTTCATGTGCAGTGAGTTGTAACTTCTGTGTGGCCCAGTTTCTTTTCCCAGGCCACTGAATACTGGATGATTATATGCATGAATAGCTGCAGGTTCTGGAGCCCATGAGAACCAATCCCATTGAATTGTGGTGACATTAGTTGTAAAGTCATTAAAGATTCAGAAGCAACATGGGAGGTACAAGAactctggggggaaaaaagaaaaaaacgcaATGGCGCTGCTAATCAGAAATGAGttgaaaacaaatgcaccaATCACATTTGATGATGTCACACTTAATGACTTACTCCTTGTTGGGTCTATGCTGCTATGAATAAAAAAGTAATCTGTTGCCTGTCTATATATTCGCTCTTAAGCACTGTGTTCCATGTTAGTTTGTGAAGCCTGTATATGCCAGGACTTAGCAAGCTTTTCCTGTAGAACGTCCTGTAGTCTTGAGTCTGAAAAGCACAACTCTGCTTGTCCGAGGCCCTGTGGTTCCTCTTGTCAGTACTCCAAGATGGGCAGATGCATAAATGATACCTAAATACAGTGCTTTGATAAGGTGAAAAGTGTATGTTCCAGTATAGAAGATCTGGGACTCTTTGCAGTAATCTGTAACTgctatattttctgtgtttctggaGTGAAGGAAAGAGTGATAAAGCAGATTTTATGTATAGCACATGTTTTGGCCTACACCAGTAAAAGACAGATGTACAGATTGCCACAGGACTGAATTCTGTGAGAAATCTTGAACAGCGTAACAATTAAATAAGACGAATAGTCATGAAAACCAGGCTGCCTGCAGGCTTTTACAGGGTGCACAGAGATGGCAATATGGGAAGAATGCAATACTCTATTTAGTTCACAAATACTCCGCTGTCTGCTCCTGCGTCAGTCTGTTACAATACCCCTTTCATCTGCGCAATGAACACATCAGAAGGGTGAATTGTTTGTGGCAAAACTGAAAATCtcaaaataacacagaaaagGCAAAGAGTTGATTCTGAGAAAGGGACGTTGTGTTTTCAATTCATGTTGGattctctctttattttttaagctgtGGATTCATTGCAGCATTCCAATGGTTCATGTTGTGAAACCAATCCAAATCTGAacattttttgttgctgttctgTTGCTGCTTTCCAAAATAATTTGCATGCTTTAAAGCACTAATTGACTTTAGACCTTGGATGCATggattgttaataataataataataataataataataataataataatgattaaagaaggaattcaaagcaaaacataGCATTTAAGCTGTGCGCAGTTAGAAAACCATGcacttctccaggaccagaatTACGGCCTGTCAAATGTCATCCCTACACCATCCATATCTAATTTAGTAGTTGCAGCCTTGCTCTGTGATGAAGAAGTGGAGTAGTGTGTAGTTTTTGAGTGGAGATTCCCCAAAAGATGTGGAAAGTCCAGGTCTTCCAAAGCTGTCTCCCAGCTGTGTGAGTTCAGGCCCACTGCAGCCTGCGCTTTCATCACCGTGATGTAAATAGTGTGGTGTGTTATTAGACACGTGTGAGTCTGcagggtttctgttttttttgttcccaaTCTGTGTTTATACTGATCTGGAAAGAACATTTCAGAtcttaactaaataaaattgttCTTACAATTGTGtacagaatgtgtgtttttaatgtttccagCTAATCAATTGATTAATATATTgattaatgcataatttatgtatactgaacaaaaatataattgcaaccTGTAAAGTGTTG

Function

GO: NA

KEGG:

id description
K11792 DDA1; DET1- and DDB1-associated protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196235 lncRNA downstream 196159 14569562 ~ 14569836 (-) True G155783
TU196218 lncRNA downstream 274066 14489290 ~ 14491929 (-) True G155768
TU196199 lncRNA downstream 341249 14422504 ~ 14424746 (-) True G155754
TU196154 lncRNA downstream 395813 14369761 ~ 14370182 (-) True G155717
TU196137 lncRNA downstream 442881 14318979 ~ 14323114 (-) True G155703
TU196367 lncRNA upstream 202299 14980384 ~ 14981621 (-) True G155899
TU196366 lncRNA upstream 203018 14981103 ~ 14981621 (-) False G155899
TU196378 lncRNA upstream 224325 15002410 ~ 15004191 (-) False AMCG00006102
TU196434 lncRNA upstream 322224 15100309 ~ 15105533 (-) True G155957
TU196477 lncRNA upstream 400966 15179051 ~ 15217634 (-) False G155989
AMCG00006057 mRNA downstream 47425 14705551 ~ 14718570 (-) True AMCG00006057
AMCG00006037 mRNA downstream 83015 14681213 ~ 14682980 (-) False AMCG00006037
AMCG00006038 mRNA downstream 95640 14663558 ~ 14670355 (-) True AMCG00006038
AMCG00006036 mRNA downstream 103486 14660585 ~ 14662509 (-) True AMCG00006036
AMCG00006039 mRNA downstream 114242 14647589 ~ 14651753 (-) True AMCG00006039
AMCG00006043 mRNA upstream 4421 14782506 ~ 14784280 (-) True AMCG00006043
AMCG00006045 mRNA upstream 26660 14804745 ~ 14813651 (-) True AMCG00006045
AMCG00006047 mRNA upstream 72696 14850781 ~ 14851879 (-) True AMCG00006047
AMCG00006046 mRNA upstream 74072 14852157 ~ 14860735 (-) True AMCG00006046
AMCG00006044 mRNA upstream 88624 14866709 ~ 14875721 (-) True AMCG00006044
TU196273 other downstream 83034 14679797 ~ 14682961 (-) True AMCG00006037
TU196220 other downstream 256381 14509233 ~ 14509614 (-) True G155770
TU196147 other downstream 425332 14336891 ~ 14340663 (-) True AMCG00006013
TU196074 other downstream 594388 14168090 ~ 14171607 (-) False AMCG00005997
TU195614 other downstream 1911192 12843778 ~ 12854803 (-) False AMCG00006063
TU196327 other upstream 4546 14782631 ~ 14784006 (-) False AMCG00006043
TU196602 other upstream 655347 15433432 ~ 15436866 (-) True G156088
TU196604 other upstream 711317 15489402 ~ 15491642 (-) False G156088
TU196760 other upstream 1175991 15954076 ~ 15957090 (-) True G156206
TU196870 other upstream 1676284 16454369 ~ 16462159 (-) False AMCG00006083

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00007430 True 905 mRNA 0.48 6 NC_007122.7 5946767 ~ 5953636 (-)
striped catfish (Pangasianodon hypophthalmus) TU218625 False 1832 TUCP 0.42 5 NC_047605.1 19706175 ~ 19712591 (-)