RNA id: AMCG00006059


Basic Information

Item Value
RNA id AMCG00006059
length 2333
RNA type mRNA
GC content 0.40
exon number 3
gene id AMCG00006059
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15608699 ~ 15614431 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agagaaggaaaacacGCCCATTTTTATGCATTAGATCCTGCGTTCAAGGATGTGAGACGTGTGCCTGCTGTGAGTATTTGTTCAGTTAGCTGGATCTCTCGGAAACCTCCACAGAAACAACATGGCAAGGCCGGCGTGTTCCCTCTTGTGTCTGGCCGCCTTTTTTACATTGACACTCTCCCAAGATTTTGGATCCATCAAAGACCTTGAGAGAAAACCAGGGCTTGTGGCGGTGTTGTGCATCTTCTTTGTGGTCCTGGGCTTGGTGGTGGTAGTCGTCTTCGTAAAGGCCTTCAAGTCCAGGAAGCCCCATTTCGAGAAGCTGGAAGATGTACCCATGGGCAGCATGAATGAGGGATCACCTTTCGCCCAATACCCTCCGAAATGATTCTGAAGACACCTCAAAAGACCTGGAAAAGACTGAAGACACTCGCACTTCTTTTTTAACCCCTCCCCCTGTTGACAGAGAACATATAATAGAGctacatttctcttttttttttttgtgtgtgtgtgcactttcTTATACTTCTCCCCTcagcactttttttgtttgtgtgtgtgtttggttagAGCCAGCACATCGCGAAAAACcgcatttcctgtttttctgaaGGCGGGGAAATGTCTTCTTTTAATGTTTGCTGAGTGAAACCACAGCTGCCCTCACGGGCCAAAACGAAGCATCCATTTATCTTGTCTGCTGAACACATATCTTCTCCTGAGGATAAGAGATGACGTCATTAATATGTTATGTGTAtagagatgtgtgtatgtgtgtgagggcggggtttgtatgttttctgattgtgtttgtgttgcagtgacTTATAGTGTGCTAACTATGGGAATATCTGCATGATTAACCTTAGGTTTACCGTAGCACAATTACAAAAGGAGTTTTGCATCTTAGTTTTCCAATGGTTTCCTATAGTTTTAATCTGCCTCCACTGTGTTTTACATCACTGAATCACAGACATACCATAATATACCATAATAGATATTTCTAAGGCATGGTTACTGTGTTGGACCATGGTTTATTCATGGTaaagtgtagtaaagcacagtaaatGCCATAGCAAACCACTGGAAAACTATGGTAGAACcctaataaaacaatgttaaaagtgCACCAATCCTATAGTACATTTACCAAACTTGAATAAAAGTATTCttcatatttagaaaatacTATTATGAGATATTCATTTCCTTTGTATTTGAGTTTTAGAGAACTCCAGGTTTGGATTCTAGTTGAACTCTTAGTtgattttataatgaaaataagctGCTGACTGAAGACACCTTTAAAACCAGCAGTATTGTGAATCTCCAAGACTTGGGCTGTAACATAATGCCAATGGAAAAGCCCTCTTAAAGTCTAAGATGAATCAGATACAAACCACACCTCTCAGCCCACACACCTGTTTACGACTTTTCCCCAAGCCTTGTCTTGCAGGAACACCTAGCAGAGAGATTGCAGCGGTTCAGTAATGCTGGGAATGGGATGATACTTTGGAATACAAACTCCTCTTACTTAAGCTCAAATAGTAATCGCACGCAGCAAGGTTGTAATGTAACTAGACTTTATGGGCTTTGCAAGGTCTTAGTTTAATAATTGAACAATGCCTACCTGCCTCCATAGTCTGGTGAAAGAGCCCTTGAGTGTCTCAATGCAAGGACATACTCCGACACTGACGAGCACTTGTCCCTGTTTCTACGCTATGTCCTTTGACGCGGCTCTCTGTTGTGGTATCCCACTTACATCATAGTGATTTTTGCAGTGGGAAGGGTTTCTAACAAGAAAAAGGCGAGAGTTTTGCAGGAACTAGGAAGTGTGCAGTGAAAATGCATCTGTTTAGCACAGGCCTGGGGAATTATGAAGCCTTGTGCGCTTTCGCATCGCTGCCATCAcactctgtttttgttgttgtttgttgttgtttgttgtgtatCATTTCAGCAGTGAGAACACAGCCAATATCAACCAGAGCTGCACTGAAACCACATAAGACACTGCCTATATGCAACATAGAATCAAATGGACAGAATTTAGTAAATTAAAGACCAGGTAAGGAGACCACACTACAAGGGATCATATAGTGCCATGTTCCTCACTAAAGTGTTGTGCAGGGCTACTTCAGGTACTGTTAATTTTGACAGGCCATAcatctacatatacatacatacatacatacataccctCCTAATCCTTATTCATAAGCACTTTGGTCATaaattggttgtatttttttgaTAATGGGCTTTTATAGGATGTTTgtttaagtaatatatatatatatatatatatatatatatatatatatatacat

Function

GO:

id name namespace
GO:0060841 venous blood vessel development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196592 lncRNA upstream 2820 15561603 ~ 15605879 (+) True G156082
TU196547 lncRNA upstream 176760 15430476 ~ 15431939 (+) True G156042
TU196456 lncRNA upstream 421474 15185874 ~ 15187225 (+) True G155974
TU196406 lncRNA upstream 497524 15109593 ~ 15111175 (+) True G155934
TU196405 lncRNA upstream 499503 15107994 ~ 15109196 (+) True G155933
TU196665 lncRNA downstream 163768 15778199 ~ 15812111 (+) True G156130
TU196694 lncRNA downstream 218648 15833079 ~ 15833294 (+) True G156155
TU196744 lncRNA downstream 418530 16032961 ~ 16035969 (+) False AMCG00006111
TU196847 lncRNA downstream 849577 16464008 ~ 16467676 (+) True G156279
TU196875 lncRNA downstream 890339 16504770 ~ 16505206 (+) True G156302
AMCG00006060 mRNA upstream 4850 15602932 ~ 15603849 (+) True AMCG00006060
AMCG00006065 mRNA upstream 24052 15578244 ~ 15584647 (+) False AMCG00006065
AMCG00006066 mRNA upstream 64346 15537561 ~ 15544353 (+) True AMCG00006066
AMCG00006076 mRNA upstream 172022 15433541 ~ 15436677 (+) True AMCG00006076
AMCG00006078 mRNA upstream 178292 15402929 ~ 15430407 (+) True AMCG00006078
AMCG00006061 mRNA downstream 25841 15640272 ~ 15640478 (+) True AMCG00006061
AMCG00006073 mRNA downstream 112239 15726670 ~ 15745152 (+) True AMCG00006073
AMCG00006074 mRNA downstream 138797 15753228 ~ 15766640 (+) True AMCG00006074
AMCG00006106 mRNA downstream 291758 15906189 ~ 15918591 (+) True AMCG00006106
AMCG00006105 mRNA downstream 310198 15924629 ~ 15926560 (+) True AMCG00006105
TU196591 other upstream 23938 15578084 ~ 15584761 (+) True AMCG00006065
TU196404 other upstream 500965 15107209 ~ 15107734 (+) True G155932
TU196402 other upstream 503132 15103456 ~ 15105567 (+) True AMCG00006092
TU196155 other upstream 1225119 14375995 ~ 14383580 (+) True AMCG00006009
TU196053 other upstream 1498829 14108173 ~ 14109870 (+) True G155638
TU196746 other downstream 350002 15964433 ~ 15973006 (+) False AMCG00006107
TU196781 other downstream 439604 16054035 ~ 16059830 (+) False AMCG00006113
TU196796 other downstream 526113 16140544 ~ 16144623 (+) False AMCG00006089
TU196902 other downstream 1013362 16627793 ~ 16629182 (+) True G156327
TU197026 other downstream 1508774 17123205 ~ 17127554 (+) False AMCG00006149

Expression Profile