RNA id: TU196591


Basic Information

Item Value
RNA id TU196591
length 3481
RNA type TUCP
GC content 0.44
exon number 5
gene id AMCG00006065
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15578084 ~ 15584761 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTTTGCGACACGCTCTACAAATCGCTTTGCGACGGGGAGTTAGTGCAACCTAACTAGCAAAAAAGCCGGAGAAGGCACCGCCCCACCTCTGCCTTGATTGGGTGTTGGTCACCCGTCAGTCACGACTCAACGCTCTGATTGGACGCAAGTAGGTTGGGATAGGTTGTAGGGACTTGTGGGTACCCGATTAAGAAAGTAAAGAAAGACTTCTAATAAGAGCTATAACCTACAGAAAAACAGCATGctGCCACTATCTTTGTTGAAGACTGCTCAGAATCACCCCATGCTGGTGGAGCTGAAGAATGGGGAGACTTACAACGGTCACCTGGTGAGCTGTGACAACTGGATGAACATCAACCTGCGAGAAGTCATCTGTACTTCCAGGGATGGAGACAAGTTCTGGAGGATGCCAGAGTGCTATATCCGGGGCAGCACCATCAAATACCTGCGCATCCCGGATGAGATCATTGATATGGTGAAGGAGGAGGTGGTGTCCAAAGGCAGGGGGCGCGGGGGCATGCAGCAGAACAAACAGCAGGGCAAGGGCCGCGGAGGGCCAGGGGCCGGCAGAGGTGTGTTTGGGGGGCGTGGCAGGGGCATCCCAGGGGCCGGGCGAGGCCAGCAGGAGAAGAAACCTGGCAAGCAGCAAGGAGGGAAAAACCAGCACTGAGGAGGGGTGTGATCGGTGCCGGGCCCCCGCTCTCCTGGCCTGGGAGCACCCCCACGACACAGTGGCCCTGCCCAGCCCAGCGCAGGCCTGCGGTCTGAGCCACTCCATGCTTTGCCCTCGGATCCTCTCTGTCTGCAGCCTGTGAAATGAATGCTACAGCCCAGCTAGGGGTGCCAGTTAAGATGTACCAGATTACTTGCTTTAATTAACAATCGTTTCTCCCCTTCAAGCCACGAAAAGCCATTTTGATTTCAAATGTACTCAGGAAGGGCTGCCATCCAAGATCTGTGTATTTTTGGTTCCCTCTTAAACGTACAAAACCTCGACGCCTCAGCCTTGAGTCTCGCAAGAGTGCGCTGTCGGGCACCACAAGCTCATTTCACCACTCGGTTAAAGTTTACAAATGCGAGCCATTCAGAAAaaacgtgtatatatatttttttggtcaATGACATATCGTTTTGTAGTAAAAGAGTTATGTTTTCAACTGTAATACCGAAACCCATCTCTCACTACTTCCTGATGAATCATTATTGTCAAAATTAGTGTTTCGACGTGACAAtgatgaaggaaaaaaataaaaaagttagtCATTTTCTCACCGGCGGGGTGATATGACCTTTGCATGAGCACAATGACAGACGCAAAGCCCAGGAGAGCTTGGATTGCGGTGTGCACAGAAGTAATGATTCAGCTCCtggtttgttatttattgtcatttgtttttattcatttgttttagctAAAGTTCTACAAGCAAGACCAGAAACTGCACCTTTTCATACTAGACACTGAAGCCTATATGGCATGTGTCCAGGCATGCTCTTACGGGTGGGTTGTGCTTGTGAATTGAGGACAATCTTTTGTCCTGATGTACATAACAAACCGTAAAGGAGGTTACAGATGGCATTTAATGGGCAGCATTAAGATTGAACAGATTCTTGCTTTGAGGCCTTTAGCTAATTTTATGTTTCTAACTCCGTAATGCGATGGTGGTGACTGCAGGTTGAAAAGTCTCTTTCACAAGGTTTCTAATGTAGAGACTGAAGATATGATAAAAGCAGAATTTTGAAACATGTGGGCAGTGTTTAGGAGGAACGGATGATGTTGCAGTACATATTTTTGAGGAACTGTTAACGTTAGCTGGTTTTGTTCTGGACATGTACATTTTGGAGACcgatttttatttcagtgaaaaataaaacggGGGTTTGAgaccctttttgttttctgttaaagGAGCAAAACGATTACTGTGGTTTATTGGAAACTGAATTCTGAAGAGCTATTCTGCTGTCACGTGATtttattaagaaacatttgGCTGGGGCCGGGTTTGagctttgaaataaacaaataaggagTTTAAAATGCATCCTGTACTATGCTGCTGCATTTCCTTCAGTATACTATACATTTGTCAATTACTAATTGATCAGTATTTATTAGCAAACCTAAAACATGGTGGGTGGCTTTGAGTTAACCCCACCTACTAGGGTTTGTTGTCATTCattcttttagtttttcccaATGGGTGAATTCGGAGACactcaattattaataaataggtGGACGTCTTGAATCTTTTATGGCTGCAGGCTGATTAACAAACTGTctgacctgttttttttttttaatgattcataCATTTGATTGTAGTTGACGGTGCCATCAGCagactgtcagtgtgtctctacATGTGTTgcagtcagttgaaaatgggaATATAGGACtaacttatgtttttttttttttttttctttttaaaggctTTCACTTACCTTAACAATATTTAAGTCTGTCTGGCACAGTGCTGAGGAATGGGTGGCAAAATTTGGATTcaagaaataaactaaacaaaccacCATTTTGTGGTCTGATTGTCAGGGTTTTTCATTCACATAGAAACCTGCTGCTCCTTCAAAATATCTTGCTTTAGTTTCCTCCATAAATTTGCCCTGGATGTGTGGTTTGCTTTTAAGAAGGTTTGATGTTTGTCAAGCTGCGATTTAAATACGGGAGAACTGGCCCTTTTGGAAAAACAAGCCCCACTCCAGACAGGTAAAAGCTGTGTGCGTGTTTAATAACCGTCCTCCTGAAATGTCAGTATTCGGATGTGGCATTTGAAGGCAGGAAAAAGGGGAGCCGCCAAAACATCCTCTGAATTGATTACTGCTGGAGACGCCAAACGAGCTATTAACTAATGGCTCTGACGGACAAACGAGCACGGTTGGTTAGAATCTGGTGTGCTCGATCGGACCTGAAACCCAAGTCAGATAAGGCCTGGTTTGAACCTGTCGGGCTTGTTGGAAAAACGCCTCGGGGATGGGCGAAAATTAGTCGAACAAGGAATTCCCAAACTAGACATCTTGGCTTTGTAGAAATATAAgctgtctttttaatttaagttcaCTCCCAAGGGCTGGTACATGACTCATACATTCTGTTCACTCAGCTGGGTTGACCGAGAGGATATTCACATAATAAAAGCCAGCAGGGCTAAGGGAGTGGCCAgctgtttagtgtgtgtgtgtgtgtgtacgtgtgcgtgtgtgtgtgaacggGTGTTACTGTATAAAAGAGTAGTTTGTTCAGATCACCCCCCGCCCATCTACCCTGATTTGTTTGACAAGTTTGTAATCATTTCCTTTCTCCCAATGAACTCTCTCCTATTTAcaagacaactttttttttttatgttcgaGATCATATATGAAACTGAATGCTGAAACGGATTGATTTGTCATAATTGTAAATGTTCAAGAAGTgttggatttttctttttataaaataaaatgacatggaAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196547 lncRNA upstream 146145 15430476 ~ 15431939 (+) True G156042
TU196456 lncRNA upstream 390859 15185874 ~ 15187225 (+) True G155974
TU196406 lncRNA upstream 466909 15109593 ~ 15111175 (+) True G155934
TU196405 lncRNA upstream 468888 15107994 ~ 15109196 (+) True G155933
TU196403 lncRNA upstream 471681 15105595 ~ 15106403 (+) True G155931
TU196665 lncRNA downstream 193438 15778199 ~ 15812111 (+) True G156130
TU196694 lncRNA downstream 248318 15833079 ~ 15833294 (+) True G156155
TU196744 lncRNA downstream 448200 16032961 ~ 16035969 (+) False AMCG00006111
TU196847 lncRNA downstream 879247 16464008 ~ 16467676 (+) True G156279
TU196875 lncRNA downstream 920009 16504770 ~ 16505206 (+) True G156302
AMCG00006066 mRNA upstream 33731 15537561 ~ 15544353 (+) True AMCG00006066
AMCG00006076 mRNA upstream 141407 15433541 ~ 15436677 (+) True AMCG00006076
AMCG00006078 mRNA upstream 147677 15402929 ~ 15430407 (+) True AMCG00006078
AMCG00006077 mRNA upstream 180987 15392880 ~ 15397097 (+) True AMCG00006077
AMCG00006049 mRNA upstream 199979 15373975 ~ 15378105 (+) True AMCG00006049
AMCG00006060 mRNA downstream 18171 15602932 ~ 15603849 (+) True AMCG00006060
AMCG00006059 mRNA downstream 23938 15608699 ~ 15614431 (+) True AMCG00006059
AMCG00006061 mRNA downstream 55511 15640272 ~ 15640478 (+) True AMCG00006061
AMCG00006073 mRNA downstream 141909 15726670 ~ 15745152 (+) True AMCG00006073
AMCG00006074 mRNA downstream 168467 15753228 ~ 15766640 (+) True AMCG00006074
TU196404 other upstream 470350 15107209 ~ 15107734 (+) True G155932
TU196402 other upstream 472517 15103456 ~ 15105567 (+) True AMCG00006092
TU196155 other upstream 1194504 14375995 ~ 14383580 (+) True AMCG00006009
TU196053 other upstream 1468214 14108173 ~ 14109870 (+) True G155638
TU196052 other upstream 1479388 14097804 ~ 14098696 (+) True G155637
TU196746 other downstream 379672 15964433 ~ 15973006 (+) False AMCG00006107
TU196781 other downstream 469274 16054035 ~ 16059830 (+) False AMCG00006113
TU196796 other downstream 555783 16140544 ~ 16144623 (+) False AMCG00006089
TU196902 other downstream 1043032 16627793 ~ 16629182 (+) True G156327
TU197026 other downstream 1538444 17123205 ~ 17127554 (+) False AMCG00006149

Expression Profile