RNA id: AMCG00006067


Basic Information

Item Value
RNA id AMCG00006067
length 7190
RNA type mRNA
GC content 0.48
exon number 24
gene id AMCG00006067
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15544838 ~ 15559349 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGAATTGGTGTGGGAGTTGGAGCTCTcgggctgtgtgtgtttcagtttgaTTTCTGATTCGGTTCGACTGCTGTTTGGGCTGAAATCCAGCGCGGCGCCGGGACAACACACACCGGAACCGGGAAACCTTGCGGAGTCCGACACGACCGCCCTTCTACTCCCCCGAAACAGAGGCTGTAAAACCCCCGTCGCTGGAGCAGAAATGAGCGTGGAGGCGTACGGGCCGAGCTCTCAGACTCTCACCTTCCTGGACACGGAGGAAGCGGAGCTGCTGGGCGCCGATACCCAGGGCTCGGAGTTCGAGTTCACCGACTTCACTCTGCCCAGCCAGACCCAGACGCAGGGGCAGACCCAGAGCCAGCTGGACAACCAGGTGAATGGCCCCGATGGAGTTTTGCAGAACGGTGCGGTGGATGATGCTGTTGCAAACACAAGCCAGCTCCTCGCAGAACTGAACTTTGAAGAAGACGAAGAGGATACTTATTACACCAAGGACCTCCCAGTGCATGCTTGCAGCTACTGCGGTATCCATGATCCGGCGTGTGTGGTATACTGCAACACCAGTAAGAAATGGTTCTGCAATGGCCGTGGGAACACCTCTGGCAgCCACATTGTAAACCACCTGGTGAGAGCGAAATGTAAAGAAGTAACTCTTCACAAGGACGGGCCCCTGGGGGAGACAGTGCTGGAGTGCTACAACTGCGGCTGCCGCAATGTCTTCCTCCTGGGCTTCATCCCGGCCAAGGCGGACTCTGTGGTCGTGCTGCTGTGCAGGCAGCCGTGCGCCAGTCAAAGCAGCCTGAAGGACATTAACTGGGACAGCTCTCAATGGCAGCCTCTGATCCAGGATCGCTGCTTCCTGTCCTGGCTGGTGAAGATCCCTTCGGAGCAAGAGCAGCTGAGGGCCCGGCAGATCACCGCCcagcagatcaacaagctggaGGAGCTCTGGAAGGAAAACCCCACCGCCACCCTGGAGGACCTGGAGAAGCCCGGAGTGGACGAGGAACCCCAGCACGTGCTGCTACGCTACGAGGACGCCTACCAGTACCAGAACATCTTCGGCCCGCTGGTCAAGCTGGAGGCAGATTATGACAAGAAACTAAAAGAGTCCCAGACCCAGGATAATATTACAGTTAGGTGGGATCTAGGACTGAATAAAAAACGGATTGCTTATTTCACCCTCCCCAAGACGGATTCAGGTGATATGCGTCTGATGCAAGGAGACGAGATTTGCCTGCGGTACAAGGGAGACCTGGCGCCCCTGTGGAAGGGAATTGGGCACGTCATCAAGCTGAGGAGCAGCGTGGGGGCCCCCGTCGAGGTGCCACACAACTTCCAGGTCGACTTTGTCTGGAAGTCCACCTCCTTCGACAGAATGCAGAGCGCCCTGAAGACATTCGCAGTGGACGAGACTTCAGTATCCGGGTACATTTACCACAAACTGCTGGGACATGAAGTGGAAGACGTCATTATTAAGTGTCAACTGCCAAAACGCTTTACGGCACAGGGGCTGCCCGATCTAAACCATTCTCAGgtGTACGCAGTGAAAACTGTACTTCAGAGACCCCTGAGTCTTATCCAAGGACCCCCCGGGACAGGAAAAACAGTCACCTCTGCTACCATCGTGTACCACCTGGCCAGGCAGGGCAATGGCCCGGTGCTTGTGTGCGCCCCGAGTAACATCGCCGTGGATCAGCTGACGGAGAAGATCCACCAGACTGGACTCAAAGTTGTGAGGCTTTGTGCCAAAAGCCGAGAAGCTATCGATTCCCCGGTGTCTTTCTTGGCTTTGCACAATCAGATCCGCAATATGGACAGcatgccaGAACTTCAGAAGCTCCAGCAGCTGAAGGATGAAACCGGGGAGCTGTCGTCTGCGGATGAGAAGCGCTATCGGGCTCTGAAGCGCACGGCCGAGAGGGAACTCTTGATGAATGCAGATGTGATCTGCTGCACCTGTGTGGGAGCCGGGGATCCACGGCTGGCCAAGATGCAGTTCCGCTCTATCCTGATTGACGAGAGCACCCAGGCCACTGAGCCGGAGTGCATGGTTCCCGTGGTGCTGGGAGCAAAGCAGctgaTTCTCGTTGGGGACCACTGTCAGCTGGGGCCCGTCGTGATGTGCAAGAAAGCAGCCAAGGCCGGCCTGTCTCAGTCCCTGTTCGAGCGCCTCGTGGTGCTGGGCATCCGGCCCATCCGCCTGCAGGTGCAGTACCGCATGCACCCCGCCCTCAGCGCCTTCCCATCCAATATCTTCTACGAGGGCTCTCTCCAGAACGGAGTCACTGCCGCTGATCGAATCAAAAAGGGATTTGATTTCCAGTGGCCACAGCCAGACAAACCCATGTTCTTTTATGTGACTCAAGGGCAGGAAGAGATCGCCAGCTCTGGGACCTCCTATTTAAACAGAACTGAGGCGGCCAACGTGGAGAAGATCACAACCAAGCTTTTGAAGGCTGGAGCCAAGCCAGACCAGATCGGCATCATTACTCCATATGAGGGCCAGCGCTCCTATCTGGTGCAGTACATGCAGTTCAGTGGCTCTCTGCACACCAAACTCTACCAGGAGGTTGAGATTGCCAGTGTGGACGCCTTCCAAGGCCGTGAGAAAGACTTCATCATCCTGTCCTGTGTCAGAGCCAACGAACATCAGGGCATCGGGTTTCTGAATGATCCCCGTCGTCTCAATGTTGCTCTCACAAGAGCCAGATATGGTGTGATTATTGTTGGAAACCCAAAGGCTTTGTCTAAGCAACCCCTGTGGAACCACCTGCTGAACTACTACAAGGAGCAGAAGGTCCTGGTGGAAGGACCCCTGAACAACCTGAGGGAGAGTCTCATGCAGTTCAGCAAGCCCCGCAAGCTCGTCAACACCATCAACCCGGGTGCCCGTTTCATGAGCACAGCGATGTATGACGCTCGGGAAGCCCTGATTCCGGGCTCAGTTTATGACCGGAGCAGCACAGggCGTCCGTCCAACATGTACTTTCAAACCCATGATCAGATCGGGATGATTGGCGGTGGGCCCAGCCACATCGCTGCCATGAACATCCCCATCCCCTTCAACCTGGTCATGCCACCGATGCCGCCTCCAGGGTACCTGGGGCAGGCGAATGGCCCGGCAGCAGGCAGAGGAGCCCCAAAGGGTAAAGCTGGCCGCGGAGGACGCCAGAGGAACCGTGGGATGGGCAATCAGGGCGGCAGCCAGGGCAACCTGCCCAACAGCCAGGCCAGTCAGGACGTGGTCTCCCAGCCCTTCTCCCAAGGCCCCCTCACTCAGGGCTACATCTCCATGAGCCAGCCGTCTCAAATGAGCCAGCCAGGCCTGTCCCAACCAGAGCTGTCTCAGgacAGTTATTTGGGTGATGAGTTCAAGTCCCAGATTGATGTGGCGCTGTCACAGGACTCGACTTACCAGGGTGAACGTGCATACCAACATGGCGGGGTGACTGGACTGTCACAGTTGTGGGAAGAGGAGCTAGGCTTGAGATGAGCTTAGTTCGTCAGCATTTTAATCtgggtaataaaaaaaaaacaaaaaatggataCCTGTTTTCCACTGCTACAACTGAAGCACCACTGTGTGAAAGCAACAGGAGGAGTGAAACCAACCAatcacgagagagagagaggagagagagacagacagaaagacggacagacagggagagaaagaccACTGCTAGCACACTGAGACAGAAGGGAAGGAGAAAATGCGGAGTATGTGGTGGCGCTGATGCAAAAGAGGAGGCTCTGGTCTCACATCGAAAACAACGTTCCTCCCTATGAAAGAagcccccaccccaccctgaTCCCCCGTCCcgctcccctcctcccccccggGAATGACCTGTTGACTGAGGTCCTTGCTCTTCTGGCAGAGATAGAGGGGAGAAGGCCTCAGGCAACGTGGAAACTCATTCCATCGCCTGTTCCACAGAGAAGCGGGGGGAGTTTATCGCTTAAAGCAGACCAAGAACATTTTTAACCTCAAAGTTGATCTGTTCACACTCAACAGAGCTCTCGGTTCAGTAAAACGCATACCAAATATTGGGGGTAGCAATATTGAGCAGATAAAAGCTGCGTCTTTGTTACACCAAACAAGCAAAGcagtataaaaacacaaacgaCCCCGATTCTGGTTCAACTTTGAGTTGCaaaagttttctgttttaagtCCGATAAAGAAATTCTGAATTGGAAACGCCTTTGAATGCGCTCGGATTTTCACTGGCTTTCTAAACAGGTCTTTCACGAGGTGGCTTACTGGCGTCCGGAGGTGAACTGCACTGGAGACACAAAGAGAGGCTCGTCTCTTTAAGATCTGAGCGGTGGGACTGAGAGATCTGTAGTCGTGAGACAATTTTCCGAAGTCACTTTCTTCTAGAAAAACCAGCATCGAAGAGTACTAACTTGGTGTAATTTTGAAGTTGTGGCTTATGGCTTATTGATCTTCTTTAATGAAGGAAAGCAGTGAATGCTAGTGAAGATGTGGCCTCCgagctacaaaaaaaataagaaaaaaagagggTTTTCGATATTTTAAATGCTCTGTACGCTTATAGCGGCTACTGTCCGAACTCGGAAGGAAGGGGTTTGCAGAAACCGATTGCCTTCGGCTGTAAGAGTTGCCTGCTTTGAGCAACTCCCTAGAAAAAGACAccagggaaagagagggaggcgatatatatttatttatctatatatatatatatttacggGAGTCATACAGGTGAAGTTTCAGCAGGTAGATGGATAACAAATGGGGAAAGAGTTTGAAAAGGAAGGTGGCTGAATGGATTTCAATTCCaggaaaggttttgttttttgtttgtttgtatcttttCATAGAGGTTTGCTGCTCTAGATTTGTGTGTATCCTGCAAAGGCCAAAACCTTTTCCAGGTGGTAAAGTGGACCCATCTAATTTCCAGGGATGCACACACGATTTCCAACCGAAATGCTCAAACCTTAAAAATGACAAGTAGCATCAGCCTTTTGGTCCATTCGGAGTGAATTTCACATAGATTAGTGagtttttgcttttcttgtaggttttttttttttttttttttaagtcaggtTTGGTTTTAGTAATGCTGCCTGTCTACAAATAAAGAATTAGATTTAATCtcttgcacttttttttttgtgtgtgtgtaccgcTTTAGTGAGCttaccttttcatttttcatccaGACATCCAAAGAATTCTTGCGCACAGCCCGAAGTTTGAATTTTCTAATTGGGATCTTCTAGTCTGTTTTTAACAAGGTTGAAACAATTTGATTAAAGGTGGAGGATGGAAGTGGAAGTACATCCTGTATCCTAAAAACACAAGCTCagactttttatgtattttttattgttataaaaGAGTATCCATTTCAAGAGGTTGCTTGTAGAGTCTTAGGTTACCCCTTGCCTCCGTAGAATAAGAGGTCTGTATTTCTCAGATGAAAGGATGGAGAATAATCAGTGCCTATTACTGTACTAAGACTGTTACTTTAAGGATGATTTGAACATGATTGTGGTTTCATTTATAAAGCACCACAACCTCTTGCCAATAAGGAGTCCAAAATTTTGAATGTAGGGTGAAGCATCTGCACCAGCTAATCCAACTGTAGGATGAACACCAACTGATCCTGCAGTTTGTTTCCCCCgttttgttcttaattttttttaataacaagcAATACTAGATGAAAAAATCACAGTCGAAATTTGatgcttctttatttatttttttccattgctgGTTGTAATTTCTGAAGGGCAGAGAAAtacaggccaccttcctcctgTCAGGAGTTaccattaacaaaaacagactggcCGAAAGGGCTTTTCTTTCATCacttctcattttattttattttttaagttttgttttgcttctcaGTAGTTTGTAGACTGCAGTTTGCCTATTTAGTAGAGATCTGGAGTAGATTTCTGTGACTCCCATCCTTTTGTGAACTGTGATCAAGTGATGTAATAACCCCCTTCCTCTCCCCCACCTTTTCACTGGTTGCAATgattgctttgatttgtttttgcagttttatttttctctgtagcagcaagtgatgtttttttgtttttttttgtatgctgGAGAAATCGGTGCATTCCTGCATTTGATGGAGATGGggaaagtatttttgtttgtttttgtccaagTTGTTATAAAAGCTGTCTTTAATAAACTATCATAAGTAGTTTTTGCCATGCGGAAGACTTATTCTTGACTGTCCACTGATTGGGTTTTCACCGTTGACCACCTAACCATTGTAGTCCTGTTTTAGAGCCATCAGCTGAAGAGctttaaatatagatttgatgTCGCTCAAGAGTTGTACAATTCTAGTAAACAAAACATGTGGATTTATTGTTTCCGGACATTGAGCACAGTAGTATATTTAGTTGTGTTCACAGATTGACAATCACGCTTGCTTCACGATCATGAAATCTCGTCTTGTAATAGTTCTACAGCTACTGTACGGAAAGTGAAAACGCCACAGCATGCTTACATCCAACTGATTGTGGGGAATACTATGGATTTTCAAACCTATGATGTGCTTCTTCAATTGTATCAGTTTTTGTGTGCGTGCCCCCTGCCCAGGCAGAAGACAAAACAACCGAAACTGAAAGGGAGGAATCCGTATAATGCATCTCTATTGTCGACATTCAGCGGATGCAACTCCTTGccttggttgtgtgtgtgtgtgtgtgtgtgtgtgttcggtAGAACAGCCACCAGCCACTGTTGTGCATCTTACAACAGGATGTGGGCGGGGGACTTTGCATTACTTTGCTTTGTGTGCAACGTGTATAGGAGACCTTGCTGGGAACATGGTATTTGAAAGGAAAGCAACCTATTTGAAACAGACTGGGGACAGTGGGCAAAGGAGTGAACCAGGAGAGATTTGGAAGTCTGtaatgggattttgtttttctttggcggagatttttttttgtttctttactgggggtgggaggggagaTCTGAACTCACCAGGAATGGGgagattgtatttttgttgctgTGGAAATTGTTTGCCTTCAcctatgcttttttttttttttcttcttcttaatctGAAATAACCCACCTGTAACACCTTAATCTCATTCCTGTAAATTTAttgaaacttttaaaacaaattaataaaggttgcttctcttta

Function

GO:

id name namespace
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0009790 embryo development biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K14326 UPF1, RENT1; regulator of nonsense transcripts 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196599 lncRNA downstream 107972 15435124 ~ 15436866 (-) False G156088
TU196556 lncRNA downstream 112908 15427308 ~ 15431930 (-) True G156049
TU196553 lncRNA downstream 120988 15417978 ~ 15423850 (-) True G156048
TU196530 lncRNA downstream 177197 15366104 ~ 15367641 (-) True G156028
TU196499 lncRNA downstream 226661 15295713 ~ 15318177 (-) True G156003
TU196629 lncRNA upstream 22508 15581857 ~ 15584766 (-) True G156104
TU196640 lncRNA upstream 56213 15615562 ~ 15615787 (-) True G156113
TU196754 lncRNA upstream 387859 15947208 ~ 15947527 (-) True G156203
TU196762 lncRNA upstream 435438 15994787 ~ 16000039 (-) True G156207
TU196784 lncRNA upstream 503384 16062733 ~ 16063072 (-) True G156225
AMCG00006068 mRNA downstream 15514 15496753 ~ 15529324 (-) True AMCG00006068
AMCG00006082 mRNA downstream 56157 15483162 ~ 15488681 (-) True AMCG00006082
AMCG00006079 mRNA downstream 64520 15469241 ~ 15480318 (-) True AMCG00006079
AMCG00006081 mRNA downstream 143874 15397252 ~ 15400964 (-) True AMCG00006081
AMCG00006080 mRNA downstream 154257 15378222 ~ 15390581 (-) True AMCG00006080
AMCG00006069 mRNA upstream 6113 15565462 ~ 15574687 (-) True AMCG00006069
AMCG00006075 mRNA upstream 214329 15773678 ~ 15776508 (-) True AMCG00006075
AMCG00006085 mRNA upstream 218858 15778207 ~ 15784001 (-) True AMCG00006085
AMCG00006086 mRNA upstream 229998 15789347 ~ 15818856 (-) True AMCG00006086
AMCG00006087 mRNA upstream 281563 15840912 ~ 15877424 (-) True AMCG00006087
TU196604 other downstream 53196 15489402 ~ 15491642 (-) False G156088
TU196602 other downstream 107972 15433432 ~ 15436866 (-) True G156088
TU196327 other downstream 760832 14782631 ~ 14784006 (-) False AMCG00006043
TU196273 other downstream 861877 14679797 ~ 14682961 (-) True AMCG00006037
TU196220 other downstream 1035224 14509233 ~ 14509614 (-) True G155770
TU196760 other upstream 394727 15954076 ~ 15957090 (-) True G156206
TU196870 other upstream 895020 16454369 ~ 16462159 (-) False AMCG00006083
TU196884 other upstream 946244 16505593 ~ 16518111 (-) False AMCG00006118
TU196919 other upstream 1110452 16669801 ~ 16671387 (-) False G156341
TU196984 other upstream 1388648 16947997 ~ 16950117 (-) False AMCG00006127

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031663 False 8456 mRNA 0.46 24 NC_007113.7 56168619 ~ 56237133 (+)
grasscarp (Ctenopharyngodon idella) CI01000075_00059491_00078552.mRNA True 2985 mRNA 0.56 20 CI01000075 59491 ~ 78552 (-)