RNA id: AMCG00006068


Basic Information

Item Value
RNA id AMCG00006068
length 3208
RNA type mRNA
GC content 0.45
exon number 9
gene id AMCG00006068
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15496753 ~ 15529324 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGGGCAGTGTTTGCAGGATGGGAAAACACCATGAACCGCCTGAAAAGTGAAAATAGCCGGAGGGTGTCACCGTCTTAAATAGAGAAATCAGTAAAGCAGCGTCCACACATTTGCACTGCAGAAACAGATGCGAAGGGCACAGTTGGCACAGCGGAGATATAAGtgaAATTCCGGTGGAGATTTAAGAAGCATCCGGATCCGGAGACAAAAGAAAAGGggaagagaggggagagagaagaaaaaaatagccCATGCACCAGCAATTCAAATAAACTGGATTAAAATCAAAAAGCTGAACGACAGAGGTGCCAAAACGAAATGggCAAGCATGCTGTCACAGTCTCATTTTTCTACGACGCAAACAGAAATGTCTACAGAATCATCAGTGTGGGAGGGACAAagGCCATCATTAACAGCACCATTACGCCCAACATGGCTTTCACTAAGACGTCCCAGAAGTTTGGCCAGTGGGCGGACAGCCGGGCGAACACGGTGTATGGCCTGGGCTTCGCCTCAGAGCAGCAGCTGCACCAGTTTTCAGAGCGCTTCAAGGAGGTGAGGGAGGCAGCCCGTCTGGCTCGTGAGAAATCACAGGACAAGTTTGAGCTGAGCAACCCTGGGCTCAATATCGCCGCCCCACAGGACCTGTCTGAAGACCTGCAGTCTCCCCCCGTGATGTCGATCTGCGAGATGAACTGGGAGGCGGAACTGTTCACCCTGCAGGATAGCAACACCAAACTGGTGGCGGCTCTTCATGAAGCCAACGCCAATGTGGAGCAGTGGAAGAAACAGCTGGCAGCCTACCAGgatgagacagagagactgagggagcAGGTGGCAGAACTGGAAGATCAGGGCGGCCGACACGTGGGCACAGACATTGGCAAAGATGAGCTGTCGCAGTCTCTGGAGGAGCTGGAGTCCCTGCTCAAAGCCAAAGACGAGGAACTAGAAGCGCGGAATGCTGAGCTGGAAAGACGCGTCCAGAATGCCGAGCAGACACTGGCCAGCTCCCTGGAGGAACGAGACCGGGCGGAGAACGAACTGCACCGCATCATCGACATCCTGGATGTCAAGATCTTCGACCTCAATGACCTGAGACAGAGCCTTGCCAAGCTCATCGACAAATAGCCACCGCTGGGCCAGCCTGGGGGCGGGCacatagtgagagagagagagagagagctgggccAGTCAGCTCTAGCATAAGCACAACTGTTTGGGGCAAAAGCAGGAGCCCAACACTCTGGGTTCCACTGCAAAGCACATAAGTTAgcgggaaaaaaacaaaccattagcGCTTGTAAACGTGGCGAATGTAGGATGCAGTATTAGGTCAGTGTTTTGGGGGGTGGGAGACATTTtgacttttttgtattttgtttttactttgatgTAGCCTAACTAGGTTAAGATTTAAGATGCTTCATAATATTCAACTTTTGTCAGTATTAGTATTTTTAAGAGAGAAGAGGTACATACTCACTAGGACTTGAGTTCAGGAGAATCAGCATAGCTGTTTACCGGTGCGATacaaatgtatgattttttttttgttctcttcgCAACAGTTTCTGATTGATTAGGCTGGAGAGAAGATTGCCAAGAAGTGTTTAAAGGGGTTTGGGGTTTGATTGCCACCCGCACAAGCCTGGAAGGTGGCGTATCTCTTAAAATCACCAAGATGTATAAACCTGGTGTGCGAAGAATGAAGTTCCTCAGAACAATggacgacaaaaaaaaaaaaaagacaacttgGATTGAATTAGTGTAGAatgataaaatacaatgaaaatgtatctaaTTTCACAATGTGAATCCTGTATAAATTTGTGCTATCTAATAACCGAGCGTAGCAGGTACTCATCTGACTTTTGTAGcgtcaaattatttaatattgacagATTGCCATGCTCagtttgtatttctgttcacATACTGTCGATTTTGGTTACTTTGGTACCTGTCAATTGAGGACTGAAAGTGCTGTTTCTGTGTACAAAGTGCTACCAGACAAGTTAAGCAAATCTGGACTGGTCTAGCAAAGACTTCAAGACATCTGCTTTCAAATTGGACCTGAGTGCATAGACCTGTGAATGGTTTGAGGTTTTTGatggtttttagttttttttgtccCTACTGTTGTGTCGGAAACGATTGGTGAAGTTGAGTGGCAGTTCAGTGAATGCTTTGTTTCGTTTGGCATTTGAGAATGCATGTCAGATAACGGGACCGGAAATCGGACGTGTGTATATGGAACCCAGACCTGTACTTGGATGGACAGGCAGTTTGTATGGGACTTGTGTGCATGCCACCCCATAGAGTACTACACCTTAGTAGACGATGACGCCAATTCCATCCtacctgtaaaatattttgggaACCCTCTGGATGCCAAATATGGAAAGCCATtgcaaaaggaaattattattatgattattccATTGTATAAAATCTGTTatcacacatgtatgtatttttgtgcaaGAAGATATAGACTGTCGTGTGCATACTTGAAATAATGAGGTACAAGAATCTTAAGCTTCTTCGGTAAAAtaccgggggtgggggggggactttTCAAATCACAACCTCTCGCTGCTTTGCTTTGGAGTGTCCGGTTACAGATTGACGAGTTGCTGACAACCGGTCGGACAGGAAGGGCGGAAATGGCTTTTTGGGTGTTGCGAATATCTGGTTTCTAATGTCATTATGTGTTCTCTGATAGCTTGAATCACTTTGGCCTGTTAGATGTAATGTAGAGGCTGATGTCTGACGCCTCAGGATGCATATTtaggttttcaaaatgtatttaagtagaGCCACAGTGGGCGAAAGGTAGAATCGCTGCAGAGCTGGTCTTCAGACTTGAGTTAAATCACATGTTTCTTGGATGAGAGCCTAGAGCAAAGGCCTTGGTTTGACACATGACTGTGATACTCAATCCCAGTGTTACCTGGAAGCTGCATTGTACTGAAACTGCCCGACATCAAGAAGATTGTCAACCTAAACCCAGACCAGAGCAATTTGTTTAATGCATCTGGCAATCTTTTGGCACAATCAGACTCCCCAAAAATAGTGGATGAGTTCTGTTTTGAAAATCAAATGAAGGACTggactgttgttgttttttttctcccttctttTAAATTGACCACATTGTGAGAAAAAGAAGCCAATCACAACACAGTTTTGGGGACTTGATTG

Function

GO: NA

KEGG:

id description
K15010 HOMER; homer

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196599 lncRNA downstream 59887 15435124 ~ 15436866 (-) False G156088
TU196556 lncRNA downstream 64823 15427308 ~ 15431930 (-) True G156049
TU196553 lncRNA downstream 72903 15417978 ~ 15423850 (-) True G156048
TU196530 lncRNA downstream 129112 15366104 ~ 15367641 (-) True G156028
TU196499 lncRNA downstream 178576 15295713 ~ 15318177 (-) True G156003
TU196629 lncRNA upstream 52533 15581857 ~ 15584766 (-) True G156104
TU196640 lncRNA upstream 86238 15615562 ~ 15615787 (-) True G156113
TU196754 lncRNA upstream 417884 15947208 ~ 15947527 (-) True G156203
TU196762 lncRNA upstream 465463 15994787 ~ 16000039 (-) True G156207
TU196784 lncRNA upstream 533409 16062733 ~ 16063072 (-) True G156225
AMCG00006082 mRNA downstream 8072 15483162 ~ 15488681 (-) True AMCG00006082
AMCG00006079 mRNA downstream 16435 15469241 ~ 15480318 (-) True AMCG00006079
AMCG00006081 mRNA downstream 95789 15397252 ~ 15400964 (-) True AMCG00006081
AMCG00006080 mRNA downstream 106172 15378222 ~ 15390581 (-) True AMCG00006080
AMCG00006101 mRNA downstream 315436 15161321 ~ 15181317 (-) True AMCG00006101
AMCG00006067 mRNA upstream 15514 15544838 ~ 15559349 (-) True AMCG00006067
AMCG00006069 mRNA upstream 36138 15565462 ~ 15574687 (-) True AMCG00006069
AMCG00006075 mRNA upstream 244354 15773678 ~ 15776508 (-) True AMCG00006075
AMCG00006085 mRNA upstream 248883 15778207 ~ 15784001 (-) True AMCG00006085
AMCG00006086 mRNA upstream 260023 15789347 ~ 15818856 (-) True AMCG00006086
TU196604 other downstream 5111 15489402 ~ 15491642 (-) False G156088
TU196602 other downstream 59887 15433432 ~ 15436866 (-) True G156088
TU196327 other downstream 712747 14782631 ~ 14784006 (-) False AMCG00006043
TU196273 other downstream 813792 14679797 ~ 14682961 (-) True AMCG00006037
TU196220 other downstream 987139 14509233 ~ 14509614 (-) True G155770
TU196760 other upstream 424752 15954076 ~ 15957090 (-) True G156206
TU196870 other upstream 925045 16454369 ~ 16462159 (-) False AMCG00006083
TU196884 other upstream 976269 16505593 ~ 16518111 (-) False AMCG00006118
TU196919 other upstream 1140477 16669801 ~ 16671387 (-) False G156341
TU196984 other upstream 1418673 16947997 ~ 16950117 (-) False AMCG00006127

Expression Profile