RNA id: AMCG00006071


Basic Information

Item Value
RNA id AMCG00006071
length 1556
RNA type mRNA
GC content 0.52
exon number 7
gene id AMCG00006071
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15204854 ~ 15215919 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaagagagaagaagaaaaggcGGGGCTTGTAGCAAAGCGGGCGGCAGTGCGGGAGCAAACTTTGAAAGGAAGTGTCCCCGGCCGCAGCCCGGCTCAGAGCGCCTGTGTATCGGAGGAGCGACGCTGCAGCCCTCGGTGTCTCTGCAAACCCCGCCACAAACGACCATGTCCAGCTCGCAGTTCAACAGGGGGCCTGCTTATGGTTTCTCCGCAGAAGTCAAAAGCAAAatCGCCCAGAAATATGACCCCcagaaggaggaggagctgcGGGTCTGGATTGAGGAAGTGACCGGCCGACTGATCAACATACTGCAGCCTGGATCTGTGAAAAAGATCAGCCAGTCCTCTCAGAACTGGCATCAGCTGGAGAACCTGTCCAATTTCATTAAGGCCATCACGAGATATGGCCTGAAGCCTCACGACATCTTCGAAGCCAACGACCTGTTTGAGAGTGGCAACCTGACCCAGGTCCAGACCACCCTCCTGGCATTGGCTGGCATGGCTAAGACCAAAGGCCTGCAGTCAAGCATGGACATCGGGGTGAAGTACGCGGACAAACAGGAGAGGGCTTTTGATGAGGAGAAGATGAAGGCTGGCCAGTGTGTGATTGGGCTGCAGATGGGTACCAATAAGTGTGCCAGCCAGGCCGGCATGAATGCCTATGGCACCAGGAGACACCTGTACGACCCCAAGGCCCATATCCTCCCGCCCATGGACAACTCCACCATCAGTCTGCAGATGGGCACCAACAAGGGAGCCAGCCAGGCTGGCATGACTGCCCCTGGCACCCGCCGTGCCATCTATGACCAGAAACTGGGCACTGACAAGTGCGACAACAGCACCATGTCCCTGCAGATGGGCTACACCCAAGGCGCCAACCAGAGTGGCCAGAACTTTGGGCTGGGCCGGCAGATCTACGACGCCAAGTACTGCCCCAAGAGCGAGGGTGGAGAGAATGGGGCAGAGGCTGTGGCCTACTACCCAGAGTACCAGGATGAGGGCTACCAGGGGGGCTACCCAGAGGATGGGCAGGACTACTAGAAACCAGCAGTGAAGAAGGGGCGCTTGGGAAGAGAATGGGCGGGTGACGAGCTGTGTCAAAgatagctttttatttttatcttatttttagtttttaattcccCCTATCTTGGTAGTTTGTTCCCGAAATGAAGACTTGATGAAGAATGGAATTTGATGTGCCTCTCTGAGGAGATGTTCTTGTTTAGGGGTTTTTCTGACCAGTGAAGAAGCTCGTAGCAGCCTCTTTGCCAAGCATCCAGGCAGGAGGAaactgtacagagagagaggctctCAGCATCCATTGCAGTCCTGGCAGAAACCAGATTGTGGCCCCTCCCAGTGAGATGAAGAACagtatgtgtttattgtttgatCACAGGTggcttttttcttcctttttaagGGGGGGGTTGGCTTCAAAACTGTTTAATCCCTAGAAGAGGACCAGCTAGAGTCTTTCCAAATCGTGTATCTGCAACATCCtaccattttcctttttttttttttttttttttttttttttttttttttt

Function

GO:

id name namespace
GO:0031032 actomyosin structure organization biological_process
GO:0043408 regulation of MAPK cascade biological_process
GO:0043535 regulation of blood vessel endothelial cell migration biological_process
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196456 lncRNA upstream 17629 15185874 ~ 15187225 (+) True G155974
TU196406 lncRNA upstream 93679 15109593 ~ 15111175 (+) True G155934
TU196405 lncRNA upstream 95658 15107994 ~ 15109196 (+) True G155933
TU196403 lncRNA upstream 98451 15105595 ~ 15106403 (+) True G155931
TU196400 lncRNA upstream 101475 15100320 ~ 15103379 (+) False G155929
TU196547 lncRNA downstream 214557 15430476 ~ 15431939 (+) True G156042
TU196592 lncRNA downstream 345684 15561603 ~ 15605879 (+) True G156082
TU196665 lncRNA downstream 562280 15778199 ~ 15812111 (+) True G156130
TU196694 lncRNA downstream 617160 15833079 ~ 15833294 (+) True G156155
TU196744 lncRNA downstream 817042 16032961 ~ 16035969 (+) False AMCG00006111
AMCG00006070 mRNA upstream 8113 15188224 ~ 15196741 (+) True AMCG00006070
AMCG00006090 mRNA upstream 19641 15181964 ~ 15185213 (+) True AMCG00006090
AMCG00006091 mRNA upstream 48349 15148938 ~ 15156505 (+) True AMCG00006091
AMCG00006092 mRNA upstream 99365 15103543 ~ 15105489 (+) False AMCG00006092
AMCG00006093 mRNA upstream 108017 15092017 ~ 15096837 (+) True AMCG00006093
AMCG00006072 mRNA downstream 14046 15229965 ~ 15271081 (+) True AMCG00006072
AMCG00006048 mRNA downstream 74737 15290656 ~ 15298380 (+) True AMCG00006048
AMCG00006051 mRNA downstream 85845 15301764 ~ 15306184 (+) True AMCG00006051
AMCG00006052 mRNA downstream 112878 15328797 ~ 15356105 (+) True AMCG00006052
AMCG00006050 mRNA downstream 150135 15366054 ~ 15372138 (+) True AMCG00006050
TU196404 other upstream 97120 15107209 ~ 15107734 (+) True G155932
TU196402 other upstream 99287 15103456 ~ 15105567 (+) True AMCG00006092
TU196155 other upstream 821274 14375995 ~ 14383580 (+) True AMCG00006009
TU196053 other upstream 1094984 14108173 ~ 14109870 (+) True G155638
TU196052 other upstream 1106158 14097804 ~ 14098696 (+) True G155637
TU196591 other downstream 362165 15578084 ~ 15584761 (+) True AMCG00006065
TU196746 other downstream 748514 15964433 ~ 15973006 (+) False AMCG00006107
TU196781 other downstream 838116 16054035 ~ 16059830 (+) False AMCG00006113
TU196796 other downstream 924625 16140544 ~ 16144623 (+) False AMCG00006089
TU196902 other downstream 1411874 16627793 ~ 16629182 (+) True G156327

Expression Profile