RNA id: AMCG00006075


Basic Information

Item Value
RNA id AMCG00006075
length 1889
RNA type mRNA
GC content 0.44
exon number 5
gene id AMCG00006075
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15773678 ~ 15776508 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACAGAACACGTCAGACACGTGTAACCCAATGGGATGAATCGGTCCGCGGTGGATTGGAAATTGAAGTTTATGTAACATTTATGATGCCGAAGGTTATGTGTTGAGGTATTACTTCAGATTGATTCAAGATACGTCCAGTCGGGCAGCTTAGATTGTTAGGATTTTGAAGATACTGTTATTATGTAACTGGAAAAGATCCCTGCAGTTTAGAAACAGCGTTGGTTTCCCTCTGAGCAGCTGATGCTGACAGTTTGACGCGTCCTGCGACTCAAAGCGACCTCCGTGCGGCCGGTCAGTCGGTGGATGTGCCTCCGCGGTGTGGCCGTAGATAGAAACCATGATCCCCCGGGGTAAGCAACTCCTAGTCCGGATTTCTGGCTGCTGGAAGCCACTTTTCAGGGGCCGGTACCTGATTGTGACCAATACCGTGATCTGCGGGGGGATGCTGGCTGCCGGGGATTGCGTCCAACAGACCCGGGAGAGGAGAAGAGACCCGGCGAAAATGCGGGACTGGTTCCGCACAGGACGCATGTTTGCTGTTGGGTGCTCGATGGGGCCGTTTCTGCATTACTGGTACCTGTACCTGGACAGGATATTTGTAGGGAAGGCCTTGAAAACTGTCAGTAAAAAAGTCCTTATTGACCAGCTGGTTGCCTCCCCAACTCTAGGAGCTTGGTACTTTGTGGGAATGGGAGTGATGGAGGGCCACACAGTGCAGGACAGCTGGGATGAATTTAAGGCGAAATTCTGGGAATTTTACAAGGCAAGCATAACACACATTAGCACGGCTGATTGGTGTGTGTGGCCTGCGGCCCAGATGATAAATTTCTACTTCCTGCCCTCCAAGTTTCGGGTGCTGTATGTCAATATAATCACATTAGGATGGGACACTTACCTCTCCTACCTCAAACACAGAATTGATGACCCCTCCGCAGACCCCAATACTGCCAGCGAGGAGAAGGAGACAGAAGTGTCCGTACCAGCTACACAGTGCTTGAAAGACAAACTCTAGACCTTCAAAAGCACTCCAAGGATTTCAGAGTAATATCTTGTGTAGtgaactgctttttaaaattaaattcagtttttggTTTTCATAACTGACGTGAATGGTTCATCAATAGCTGTCATTGGGTGTCAGTTTGGGGTTGGTGCAATGTGTTGAAAATGCCCATGCCTTTGATTAGTATAGTACATTCTGTCTGCAGACTGTTTTAATCTAGTATCCTTGCAGAAGAATATGAAGAcctattgaaaatgtaagtatcaTATCAATTGACTATTTTTATACAAGGGAGTGGGGGCTGATCTTTCAAATTCTTTACTTGAAATGAAGATAATTTTTGATtttcatacaatatataatttgatgtacttttggaaaataatattgactaattgttttttgtttagttttttttagctCAGAAATCATTTGTAGGAATATTTTCCAGGCCTCTGATGACTTTTGAGTAGTAACTTTTAATGATTGAACTTAAAGTGCCAGCCTGAGAAGACTGCTCCTCTTGACATTGTTCATTATAAAACGTGGGTGCCTTGATCTGTGCCAAAATCCGTCCACAATCCACAATCACCGTCATTGTGTATGCACTTTTGTGAGTGTACTCCTCTACCTCGCCTTTAGAAAGAGACTGTAGTAATACTGGCCCGCTCCGAAGTTAAAGATTCTTGTGTGCAGAGGTGGTCCTCGACATTCACTGGTTCTCGATGGGCAGTTGCGTGATCTTAGTGCTGTTTTTATCTGCATGGTGCAACTAATTGGTTTTAAGCTGCCTTGTTTATatctcttttattattaatcatattgtttttataatcatATGTGTCTATGTTTTGAAcaagccaaaataaaaaattctgGTCGTAG

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K13348 MPV17; protein Mpv17

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196640 lncRNA downstream 157891 15615562 ~ 15615787 (-) True G156113
TU196629 lncRNA downstream 188912 15581857 ~ 15584766 (-) True G156104
TU196599 lncRNA downstream 336812 15435124 ~ 15436866 (-) False G156088
TU196556 lncRNA downstream 341748 15427308 ~ 15431930 (-) True G156049
TU196553 lncRNA downstream 349828 15417978 ~ 15423850 (-) True G156048
TU196754 lncRNA upstream 170700 15947208 ~ 15947527 (-) True G156203
TU196762 lncRNA upstream 218279 15994787 ~ 16000039 (-) True G156207
TU196784 lncRNA upstream 286225 16062733 ~ 16063072 (-) True G156225
TU196787 lncRNA upstream 290161 16066669 ~ 16071528 (-) True G156228
TU196920 lncRNA upstream 875032 16651540 ~ 16671387 (-) True G156341
AMCG00006069 mRNA downstream 198991 15565462 ~ 15574687 (-) True AMCG00006069
AMCG00006067 mRNA downstream 214329 15544838 ~ 15559349 (-) True AMCG00006067
AMCG00006068 mRNA downstream 244354 15496753 ~ 15529324 (-) True AMCG00006068
AMCG00006082 mRNA downstream 284997 15483162 ~ 15488681 (-) True AMCG00006082
AMCG00006079 mRNA downstream 293360 15469241 ~ 15480318 (-) True AMCG00006079
AMCG00006085 mRNA upstream 1699 15778207 ~ 15784001 (-) True AMCG00006085
AMCG00006086 mRNA upstream 12839 15789347 ~ 15818856 (-) True AMCG00006086
AMCG00006087 mRNA upstream 64404 15840912 ~ 15877424 (-) True AMCG00006087
AMCG00006116 mRNA upstream 225045 16001553 ~ 16012344 (-) True AMCG00006116
AMCG00006114 mRNA upstream 247967 16024475 ~ 16031177 (-) True AMCG00006114
TU196604 other downstream 282036 15489402 ~ 15491642 (-) False G156088
TU196602 other downstream 336812 15433432 ~ 15436866 (-) True G156088
TU196327 other downstream 989672 14782631 ~ 14784006 (-) False AMCG00006043
TU196273 other downstream 1090717 14679797 ~ 14682961 (-) True AMCG00006037
TU196220 other downstream 1264064 14509233 ~ 14509614 (-) True G155770
TU196760 other upstream 177568 15954076 ~ 15957090 (-) True G156206
TU196870 other upstream 677861 16454369 ~ 16462159 (-) False AMCG00006083
TU196884 other upstream 729085 16505593 ~ 16518111 (-) False AMCG00006118
TU196919 other upstream 893293 16669801 ~ 16671387 (-) False G156341
TU196984 other upstream 1171489 16947997 ~ 16950117 (-) False AMCG00006127

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00030904 True 1563 mRNA 0.40 5 NC_007113.7 24770435 ~ 24778912 (+)