RNA id: AMCG00006079


Basic Information

Item Value
RNA id AMCG00006079
length 3683
RNA type mRNA
GC content 0.49
exon number 9
gene id AMCG00006079
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15469241 ~ 15480318 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAATGCAGTTTAAAAGTATAAAGAGCTTCACTCTGGAGCTGGAGGGCCCGGCAGACGCGGTGTACACCAGTGGGGAGCTGCTGTCTGGCCAGGTGGTGCTGGAGCTCAACCGGGAGGTGAAGGTGCGGGCGCTGAAGGTCCTGGGCCGAGGGGTGGCCACGGCGCACTGGCTGGAGAACCGCAGCGTGGGCATGAACACTGTGTACAATGACTACACCTCCAAGGAGACCTACTTCAGGAAGAGGCAACACCTTATCAGAGGTGAGCACAGTGTCCTGTTTGTGTTGTCCAGCCAGGtgcaggggttgttgacagcGCACACAAAGGCAGGCAAACTCACTGTAGCGACTCTCGACCAACGACCGCCCGCCCGCTCCCTCGGATCTAACATGATTTTCGACAAAGTGCAAAAGCTGGACGTGGTCTTCGACTCCCCCGAGGTGGACTCGCCTCCCGTGTTCAGCAGCGGGGACGTGGTGTCCGGCAAGGTGCTGCTGGAGCTGGCCGGGGACGCCCGAGTGGCGTCGGTCAAGCTGCACGCCGAGGGCTTCGCCAAGGTGCACTGGACCGAGTCCCGCAGCGCCGGCTCCAGCACCGCCTACACCCAGAACTACAGCGACGAGGTGGAGTACCTGAACCGCAGGGAGACGCTCCTGCAGGCAGataaTGGTGAAATGACCGTACTGCAAGCAGGAAGACACGAGTTTCCTTTCAGTTTCCAACTTCCTGAAGAGACCTTGGTGACCTCATTCGAAGGCAAACATGGCAGCATCCGCTACTGGGTGAAAGTCAAGCTGCATCGTCCCTGGGCCACAGTCCGGAAGATCAAGAAGGAATTCACAGTCATTGAACCCATTGACATCAACACGCCAGCTCTTCTGGCTCCCCAGGCTGGCACCAAAGACAAGATGGCACGAGTTTGGTACCGTAATTTCGGACAGGTGTCCCTTACCGCCAAAATTGACCGCAAAGGATACACCCCAGGTGAAGTGATCCCCATCTTCGCTGAGTTCGACAACTCCACCTCCCGCTCCATCGTGCCCAAGGCCTACATCACCCAGACGCAGACCTTCATCGCGCGGGGCACCATGAAGCAGAAGAAATCTGTGGTGGCCACCCTGAGCGGGGACGTGGTGGGtgccaggaggagagagacctgGCACGGGCGGGCCATCAAGATCCCCCCGGTTGGGCCCTCCATCCTGCAGTGCCGCATCATCAAAGTGGAATACATGTTGCGGGTGTGTGTGGACGTGCCCGGCACTTCCAAGCTGTCCCTGGAGCTGCCATTGGTCATGGGCACCATCCCCCTGCACCCCTTCGGCAGCCGGACCTCCAGCGTGAGCAGCCAGTACAGCGTGAACCTAGAATGGCTCCGCATGGCCATCCCTGAGCAGCCTGAACCTCCCCCAGATTATAACACCATCATCTCGGAGGAGGAGGCTGAGCATAACATGTCCCCTCCATTGATTGAGGAGGACTTCACGGGCATCCTGGAGAGACCGTTCTTCGCGTATGTCCAGGAGTTCCGCTTCCGGCCGCCTCCAGTGTACTGTGAGATTGACCCCCATCCCCAGCCTCTCAACATAAGACCTCGCTGCATGACGTATTGAACAAAACGCCTCTCTGAGCGGCGGACGACCTGACTGAATTACAGGAACTTCTCCTGGGAGAGCCAATCCAGGGACCTGGAGGAGCTGCTTCCCCTGGAGGATTAGACTGTGGAGAGGACCTCAACACAGACAGCGGTTCTCCGATCCGATCTCCGAGAAAAGATCCAACGGAAACCGTGACAAACCAGAACCTCGCTGTCTTGACTTCCCCTCCGCGGTGGACGGACTCTAATCCTCACCTAGAAGGCCGTTCTTGGCCACAGAACTCTTTCCAAACGTGACCGCATGTGTCGGTGCCGGTGTGTGTGGGGAGGTACAACTGGAAAGGGGAACTTGTATGAGGAAattcgaaagcaaagaaaactcGACCAAAGAGTTGCCATTGAGACCTGTTTACTGAAGTTGATCCCTTCTCTAGCTTGCCAGCTGGCATGAGTTGCATTTTGATGCACAtgtaagaaaaagaaatggTATACTCGTGTCAACTTAATTTTCTTGAGGGTAAAATGAATTGGTACACTTAATCcagagttattttaattttttaaatctggagCAAAGGTGATTTTATTAGTGGAGTGGACAATGCCAACGTTTTTATTTCTAACTCTGTGAAAGTTCACCCTGTTCTGTCCCCCTCCTATAAATGTCCAAACCTGCTTTCTTCAGCCTTTGAGTTGAGCCTGCCGTCCAGTTGGCTCAAGTACAGTACCGGGCACGTATATTTATAGACATTGCAGAGGAGTACAAGGCAGTCTTTCCGGAAAAACCCGGAAAAAATGCTGAAGGTTTGGACATTAAGGCACGGGTATACCACACCAAGGGACTGACTGAGAGACTTAGAATGTCTGACAAAGAATTGATGGGGGTTGCACGTACTAAGCTAGGAATCTGTAAGTCCCAAGCAATATTAATGTCAATATTTCTTTTTGGAGACTTAATCTGAGATGTCTGGAGTTTGTAAACTGAGGAAGTGGTTAATGAGTTGGTAGGGACACATTGATGCATACTTAAGTCTATTAACCCATTAGGGAAGACTATCAATGCATATGGAGTGCATATTCTTGAAAAGATCGTTTGTGATCTTTCTGCGCTTGACTTGTGAAAGATGCCAAAGATGCCCGCTTCTGATTGCACTGTTTTTAATCTTGCCGGTGTGAGCTGGGTGTAATGGGTACTGTTCCCGTTTCAAGCACAAAACTGCTTTAGTAGAGATAGTGGAAGAACTATCTGAGCCATGAGTTTTGGTGCATCTACACCAGGTGGCCTTTTTGTCTGTACTCCGGTTCTGTAAAAGTACAGGGAAAGTGTACAGACTGGTACATGAAGATTAAACTGGGAAACCACTGTTAGCATGTTGATGCAGAACATTCCGAATTGTGTGGGAGGAGAATATTCTTGCCGTTTTAACGCAAGTGTTTTGTATTACACCAGCACTTTTTTTGGTAGTGTCGTGGACAAACacaattgcaattttaaaaatgtcttttctacatttgtgtaaatgtttctgtatttcttaaCTTGCCAaagtttttatatacattttttaaataaaacaatacaaatacaaactttcattttcctttttacaaaaaacaaaggtcAAAGAACCCTTTAGAACATCCGTTCAGTTTGGATTTCATTCAAGGATGCAACATGGACCATTAGTCCAATTTCTTTGCTGCTATCCTGTctagcttttgttttattgtaatttgaacCGAAAAGTGTTAATGAATGTAGCCACTGCTTCACCTTGGTGATATAAATGATAATTCATGATCTAGGGGTTCAAACGTCTGATCAAACTGCATGAGGGACATTTTTAATGGTTGGGGAAACCAAAAGCAAACCATGGAGGATTGGGGTTCTACAGCCAAATTAAACTTGTTTAGGAAATGTGACTGTCCCAGAATTGCGGCTCGCATGAGTGCTAGAACTGCCTGCTGTAAGGTTTTGTACCTCGGATCAACCGAGGTAACTGCAAAAGGAGATGTGTATTTAGCACTGGCACTAAATATGTAATAGATTACCTCAGGAGAACCTGGTACAGAAAGTGAAAACAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196599 lncRNA downstream 32375 15435124 ~ 15436866 (-) False G156088
TU196556 lncRNA downstream 37311 15427308 ~ 15431930 (-) True G156049
TU196553 lncRNA downstream 45391 15417978 ~ 15423850 (-) True G156048
TU196530 lncRNA downstream 101600 15366104 ~ 15367641 (-) True G156028
TU196512 lncRNA downstream 138695 15272813 ~ 15330546 (-) True G156014
TU196629 lncRNA upstream 101539 15581857 ~ 15584766 (-) True G156104
TU196640 lncRNA upstream 135244 15615562 ~ 15615787 (-) True G156113
TU196754 lncRNA upstream 466890 15947208 ~ 15947527 (-) True G156203
TU196762 lncRNA upstream 514469 15994787 ~ 16000039 (-) True G156207
TU196784 lncRNA upstream 582415 16062733 ~ 16063072 (-) True G156225
AMCG00006081 mRNA downstream 68277 15397252 ~ 15400964 (-) True AMCG00006081
AMCG00006080 mRNA downstream 78660 15378222 ~ 15390581 (-) True AMCG00006080
AMCG00006101 mRNA downstream 287924 15161321 ~ 15181317 (-) True AMCG00006101
AMCG00006099 mRNA downstream 345913 15104332 ~ 15123328 (-) True AMCG00006099
AMCG00006094 mRNA downstream 365709 15098331 ~ 15103532 (-) True AMCG00006094
AMCG00006082 mRNA upstream 2844 15483162 ~ 15488681 (-) True AMCG00006082
AMCG00006068 mRNA upstream 16435 15496753 ~ 15529324 (-) True AMCG00006068
AMCG00006067 mRNA upstream 64520 15544838 ~ 15559349 (-) True AMCG00006067
AMCG00006069 mRNA upstream 85144 15565462 ~ 15574687 (-) True AMCG00006069
AMCG00006075 mRNA upstream 293360 15773678 ~ 15776508 (-) True AMCG00006075
TU196602 other downstream 32375 15433432 ~ 15436866 (-) True G156088
TU196327 other downstream 685235 14782631 ~ 14784006 (-) False AMCG00006043
TU196273 other downstream 786280 14679797 ~ 14682961 (-) True AMCG00006037
TU196220 other downstream 959627 14509233 ~ 14509614 (-) True G155770
TU196147 other downstream 1128578 14336891 ~ 14340663 (-) True AMCG00006013
TU196604 other upstream 9084 15489402 ~ 15491642 (-) False G156088
TU196760 other upstream 473758 15954076 ~ 15957090 (-) True G156206
TU196870 other upstream 974051 16454369 ~ 16462159 (-) False AMCG00006083
TU196884 other upstream 1025275 16505593 ~ 16518111 (-) False AMCG00006118
TU196919 other upstream 1189483 16669801 ~ 16671387 (-) False G156341

Expression Profile