RNA id: AMCG00006080


Basic Information

Item Value
RNA id AMCG00006080
length 6806
RNA type mRNA
GC content 0.52
exon number 15
gene id AMCG00006080
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15378222 ~ 15390581 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACGCAGCGAGCCGCGGCCATCGGGGCTCCAGGAGGCCTACGCGCCCGACTCGATTTGTTGGCGTTGCTGCGTCAAGCCAGCTTACGCCCGACATCACAGTACGCCAACCCCCGGCTTCGGGACTACGCCGTGCGTGTGTTTGTGGATTGTGGCAGAGCTCTAGTCTCCACGTCTTGCGCGCCAGTGTTGGCTTTTGTACAACTTTGTTTGTGCGGctgctgttcatttttattaaatttttctGCTCGTGTTGTGCACGCTTCTCTACTTTAGCTGCCACCCTTGTGCCGAGGCCTCGGGTCTGCGCTAATGAGAGCGCCGGTCGACGTGTGCCCCCGCCTTTGTGTCCTGAAGATCTCCTCACGTCGACGGAGCATTTTCGGTCGAACTCCACGTCGACAGCGTTGAATTTGGTCGATTTTCCGTCGACGAACTACTTCAAGTGGACACCGTTTTACTGAGAGCAATTTCTACTTCCAGTCGGTGGAAAAAACCTTTGAACCGACGGCACCTGGACTCTTATTTACAGCCTTTGAGGCTAGAGTCTCCCATTGCCATGGAACCTGCTAAGGTGCTGGCAGCACTGCGGGCGCTTGCTGTGGGTCATGACTCTCGCTCCTCATCGGAGTCGGCAGGATTTCACCGCTGTGGCAGCTGCTCCAACAAACTGCCATCACAGGATCCACACCAGTTTTGTCTGTCATGTTTAGGGCCTGGCCACGCGTCTGAGGCCCTGCGCAATCCGTCCTCTTGCCAGATCTGCACTGCGTTTCGCACAAGGACGCTGAAGGACAGACTGAAGCGAGCCAGAGGCATCTACCCTGCTTTGGCCAGCAGCTCCTGCACAGCCACATCAGCGGGGGTGGGCGGGCACCCTTCTGGGACACTTACGCATGCGACGGCTGCTGCTTCCTCCAAGGGATCATCAGCGGGGCACTCCCTCAGCAGATCACACAAGCGCAGACACCGTTCACCTTCAGCCTCTCCTCCTGCTTCCCCCCCACACCTTCAGgagcaacacacagacaaacgGCTGATGATGCTCCAAGACCACATGGCAGATTTTATGGGAGTTGTAATCAAACAGCAGGAGATGATGACCTCTCTACTGCTGCCCAAGGAAGCAGAGTCTTCCACAGCCTCCTGCTCCAGGCCTCCTGCAGCACCTGCTTCTCTGCCCTCTGCCTCCCATGAAGTGCCTGGCCGTTCCCAGCGCATTGAGCGCTTGAACTCTGGCTCTCGCACATGCTTCTCTGAGCGGCACCAAGATTCTGTCTCTCTGGAGGTGTCAGGTGGTGAATGTGCCCCTAATGCACTTGAGGTGAAAGTGGAGCCCATCTCCATACTAAGCTTGGTCACCCCTGTGTCCTCTGTGGAAGGGGGTGGGGTGCCCCCACCGGATGACTTCTTGTCCAGGGTGGGCCGGGCAGCACAGTATCTTGGAGTGCCTTGGCCAGAAGACCCAGAACCAGAGCGATCACTTTTCCATCGCCACACTCAGTCTGCCAAACGCTCCCGCTTTCTTCCAGCTTTTCCTGACTACCTCAAGGAGGTACAGGCCTCTTGGGACAAGCCTGCGTCTGGGCCATCCACGATCAAGCTGGCGGCGCAATTTGCTCGTTTTCAGGGAGCTGACACACATGGACTGACCTCTTTCCCAGTGGTGGACCCTGCCTTTGCTGCGCTGGTCTCTGCTCCTCCTGTCTCCACCACACAGAGAGACTTTGTCCTTCCAAACCGCCAGTGCAGGAGTACTGAAGTTTTCCTGCAGAAGTCCTATGCGGCAGAAGCGCAGGCTTTGCgcattcaaaatacatctaGCCTGCTGGCGGTGTATGTGGCGGAGCTGGCAGATAAGCACAAGGAGGCTCCCACACCTGAGGTAATGCGAGAGATTGCGGGAGTGGCAGACACGGTGGTGGATCTAATGAAATTCTCTGCACGTGCGTCTGGACGCTCGCTGGCAGCCCTTGTTGCAGCCAGACGCCAACTTTGGCTCACCCAAACCAGGGTGCCTGAGAGGGACAAGCCTCACCTCCTTGACGCACCCATCACTCCAGGCTTCACATTCGGCCCTGCAGTGGAGGTGATGTTGGAACGCTCCAGGAAAGCCACGGGAGAGTATCAACGGATGGTTCATGTCATCCCGCATCAGGGGCCCACTTCTACAGCTCACCGGCCCCAGCAAGGCCGTACCCCTATATCTCTTCCTGTCAGGCCTCCTGCCAATTGGAGCTGCCCTCAGCAGATGTCATCGCATAGGAAGAAGAGTTGGAGGCGCCCATCCCCTGCACGGTTTCAAGGCCCCCAGGGCGGCACGTAGACCTCCTAGTTGGCCACTCCTCACCCTTGAGACACTGCAGCAGTCACTGGCTTCCCCCTGCTCTGTGCAGCAACTCAACAATTTAGGATttaggattttttgttttcaacttatttttatatataaccacaagtgattgattaattaattactggggggtgggggattgaGAGAACgacttggggtgggggggcatggTAGTGAGAGCGGAGtgcttgtattttaatgttttatgttctttttcAACATTCTAGTTTTTGATTGGTCAGGTAGTGCACACATCTTGAATATAGCTTCAGGGATCCCTAAAAAATTgtttaaggaaatgtattacCACTCATCCTAATTGCACTGTGTGATACTGTGACTCAGTTTAATTccaagaggtttttttttcttcgtgTCACTGTCTTTAATACTAATTTAATAACTTCCAAGATGAAAAGACATGCTTGTCTAGTGCCTGACTAGGTTTGTTAAATGTGATTGCctgatttaattattcatcAAAAACCTTTGAGGAGTAAGGACCTGTATCTTTGAACATGAATTACCGAGCTGACCGCTTTGTGAAATTTAAAGTTTACTGTAAcacctttatatattttaagttaaatttgTACAATTACATGTAATAAACCCAGTTGAAACCTGAGAATGTTGCATATCAGAccagtgctttttgtttagtttcagaTTCACCATAAAATCCTGTCAGACTTCCGACAATCATTAAAAATGGTTATTTGAGTTAACGCGGCATTacaagataattattttttaagcctTTTCTAGGTAGTCAGGCAATGGAGTACTTGGACACATGcaatggagcattgtcctgcatatatagctctggaaaaaatgaagagactacttaacattgatttctgaacttggagtcgtcttttttttttttccagagctgtacatcaTGGTCCTCTTCAATGCTATGGACTTATTTTTGTACCACTCTTTGAACGTGTCTTCCAGAAACAGGCAGTAGTTTTGGGAGTTTATTTTCAGCCCATCTGCAACCCGAAAAGGTCCAGCTAGCTCATTGTTAATGATAGCAGCCCACACCATTACCCCACCTTGCTGGCGCCTGACTTGAACTGGTGCCCTGTGTCCATTACTGATCCAGCCATGGGCGCACCCATCTGGTCCATCAAGAGTCTCctctcatctgtccataaaaCCTTTGAAAAATCAGTCTTAAGGTATTTCAggttatgtgttttttgttttgtttttcagcaggGGTCATGTTTCTCTTCCTTGAGCACTTGACACCTTGTACTTCAGCTGATTCCAGGAAGGTTGCAGCTCTGAACAATGGCTTCACTGGAGGCTAAAGGGGTCCTGGAGTCTTTTGCAGTTAACTTGTGCCTTGTCTTCTCAACAAGTTTTTCGTGACTCACCTAACTATTACTTACAAAGCGTTTGATTGTGTGGTGATTACAACTCAATAGTTTGGAAAATTCAAAGGTTTTGCATCCTTCTGATGgcattttactttttccttttcagcatAAGTTAGATCCTTTTTCCTGCCAATTTTACCTGTGGTGAAAAAGCTGCCTAACTATGCACACATGAATATGAGGTATTTATCACTTTAAGCCCCTCTCTCTTTCATGAAGCAGTTATCACCTGAATGATTCTACCCACTAATTATTTAGGTTGACATGGTTTGGAGTTAGAAAACTGTGCTTGGAAATAAGTAATCAGAATACAGACTTGCCTAATTATGTACACACTGTACTTACTAACCAAGATAAATTACTTCTATTCTAAAGCCTCGATTTCGTGAAGCTTCTCAAGGGCCAAACACTTGATACATATGCCTTTATATTGACATTCCTGAACTGGCGGAGCAGGTTGATTCTTCCTGCTCTCTATGTATTGAGCGCTGCTTTGTCCCTTATGTCTGTTTTAACTTGTCCCTGTGGGTTGAGTCCACACTCCATCGCAGGCTGGATGCCCTGAGTACTGCTCTGTCCTTTTGTGTTGCCTGCTGTGACACTATTGACCGTCGGAGCAGGTGGAGTCTCTTGCTGCTCCATGTCTTGACACCAGCGGTATTCGCAGATGGCAGCTTCTACCATTTGAAGCACCGGGTGGCCATCAAAAAATCCATAGTGCGTTTCGTGCTGAGCCATCGACTGAGAAGACATCCCAGGGTTCTGTGGCTTGAGCAGCAGGTTGGGAAGATCAGGACAAGGAGAGACCTCTTCCCTCTTCCCACTGATCCCCTTTTCAAAGACCAGTGGTACCTGAGCAGTGCATTTGATCTGAATGTGGTGTCTGCCTGGGCGTTGGGCTTGACTGGAGAGGGTGTGGTGGTCACTATCCTGGACGATGGCATTGAGAAGACCCACCCTGATCTTGCTGCCAACTACgaCCCCCAGGCGAGCTATGACTTGAACGACAATGACATGAACCCCCAACCTCGCTACACTGAGGCCAACGAAAACAGACACGGGACTCGCTGTGCTGGGGAGGTAGCTGCTGTGGCCAACAACGCAGTGTGTGGTGTCGGGGTGGCCTACCGCGCACAGATTGGAGGAGTGCGGATGCTGGATGGTCAAGTGACTGACCTGGTGGAGGCCCGGTCCCTCGGCTTGAGCCCCCAACACATCGACATCTACAGTGCCAGCTGGGGGCCCCTTGACGATGGTATGACTGTGGACGGCCCGGGCAAACTGGCCAAGGTGGCTTTCATCAGGGGCATCAGCCAGGGGCGCGGGGGCCTGGGCTCCATCTACGTGTGGGCATCAGGGAATGGGGGCACCCACTTTGACAACTGTAACTGCGACGGCTATGCCAACAGCATGTACACCGTGTCAGTGGGGAGCACCACAGAGAACGGCACCGTGCCCTTGTACAGCGAGCCCTGCCCCGCCATCCTCACCACCACCTACAGCAGCGGCGGCAGGCATCAGCGGAAGATCGTCACCACGGACCTGCGGGGCACATGTACAATGCAGCACTCTGGGACTTCCGCCTCTGCCCCTTTGGCTGCTGGGATCATCGCGTTGGCCCTAGAGGCAAACCCCACCCTCACCTGGCGTGATGTTCAGCACATAGTGATACGGGCGTCTCGAGCAGCCGGCCTCAACGCAGATGACTGGAGACCCAACGGAGTGGGCCGAAGGGTCAGCCATTATTATGGGTACGGGCTGCTGGACGCGGGGAAGCTGGTCGATCTGGCCAGGAAGTGGAGCACAGTGCAGCCACAGAGGATGTGCCGTGTTGACATCGTCACCAGTCCGCTGGTGCTGCGGGGGCAGCTGCTCTTGAAGTGGAACGTGACTGCGTGTGCGGGAAGCGGGCAGTGGGTGCGGGGGCTGGAGCATGTTCAAGCACGGCTCTCCCTGAAATACAGTCGGCGCGGAGACCTGGAGATCTCCCTCACCAGCCCGCGGGGGACCCGCTCTACCCTCGTCAGCGCCAGGCAGGGTCCACACGCAAGCCCTGCCCCCTCACTGCACACACCGCAGCCACTGGCAATATTCTCTACCACTCCGTTCAACCCCCACCTTCTGTTCTTGAAGCCCTTAGACATGTCCACGCAGGGCTACTCTGACTGGGCCTTCATGACCACACACTGCTGGGACGAGGACCCACGGGGGGTCTGGACCATGCAGTTCGACGACAAGGGCGACTCGGCCAACACAGGCATGCTGTCCCACTTCCACTTGGAGCTGTATGGCACGGAGGAGAATGTGGCGGGGAGGCGTGTCGAGAGGACCGTGGTAGAGGAGTGCTTGGGTTGGAGCCCTAAGGGAGGCTGCCAGGAATGCCGATTCCCCTTGTTCGTGTTCGGCCGCATCTGCCTGCTGTCCTGTCCTCCGCACTACTACGAGTGGGGCCCCAATGGCACTGCAGGGCGGAGGTGCCTCCCCTGTCATCCCTCCTGTCAGCTCTGCGAAGGGGCAGGGCAGAGGAGCTGCAGGGGCTGCCCACCCTTCTCCACCTTTGACCCCAAGCTGAGCACCTGCAGCCCACCAGTCTACCCCTGGGATCGGGAGCACAGAGACGAGGAAGCGGATGATGCTGGGTGGGGATACAACATGTTGGTCTGGATTGTAGTCTTCTTCTTGATTAGTATCATTGCTTTCGTGCTTGCGTCCGATGTGTACAACAGCGAGGATCCGTGGCCCAGACATAGTTGGAGGGATAGTGAGATGGACACCGAGATGGACAACGAGATGGACACTGAGATGGACGATCTCAGCGTGTCCTGCTCCACTGTCTCATCCGAGGTAGATGAGATAGCCGAAGCCACAAAATAGCCACACTTCTTGTGACAATCAGCCATTTTATAAGAATTAGAGTAAATTTATACCAATGGAAGCTTTTTAAGTATTCAAATCCATATGATCATTTTTAACCCCCTGCTGTCCAACTTGGTGTACCTTTAGTGACGTTGATTTCAGGAATGCCCTTATTCTGTACagatgcaataaaaaataaaaa

Function

GO:

id name namespace
GO:0060536 cartilage morphogenesis biological_process
GO:0033334 fin morphogenesis biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0008236 serine-type peptidase activity molecular_function

KEGG:

id description
K08671 PCSK4; proprotein convertase subtilisin/kexin type 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196530 lncRNA downstream 10581 15366104 ~ 15367641 (-) True G156028
TU196512 lncRNA downstream 47676 15272813 ~ 15330546 (-) True G156014
TU196499 lncRNA downstream 60045 15295713 ~ 15318177 (-) True G156003
TU196500 lncRNA downstream 79822 15207520 ~ 15298400 (-) False G156003
TU196497 lncRNA downstream 79822 15257499 ~ 15298400 (-) False G156003
TU196553 lncRNA upstream 27397 15417978 ~ 15423850 (-) True G156048
TU196556 lncRNA upstream 36727 15427308 ~ 15431930 (-) True G156049
TU196599 lncRNA upstream 44543 15435124 ~ 15436866 (-) False G156088
TU196629 lncRNA upstream 191276 15581857 ~ 15584766 (-) True G156104
TU196640 lncRNA upstream 224981 15615562 ~ 15615787 (-) True G156113
AMCG00006101 mRNA downstream 196905 15161321 ~ 15181317 (-) True AMCG00006101
AMCG00006099 mRNA downstream 254894 15104332 ~ 15123328 (-) True AMCG00006099
AMCG00006094 mRNA downstream 274690 15098331 ~ 15103532 (-) True AMCG00006094
AMCG00006100 mRNA downstream 289314 15080401 ~ 15088908 (-) True AMCG00006100
AMCG00006098 mRNA downstream 300454 15074200 ~ 15077768 (-) True AMCG00006098
AMCG00006081 mRNA upstream 6671 15397252 ~ 15400964 (-) True AMCG00006081
AMCG00006079 mRNA upstream 78660 15469241 ~ 15480318 (-) True AMCG00006079
AMCG00006082 mRNA upstream 92581 15483162 ~ 15488681 (-) True AMCG00006082
AMCG00006068 mRNA upstream 106172 15496753 ~ 15529324 (-) True AMCG00006068
AMCG00006067 mRNA upstream 154257 15544838 ~ 15559349 (-) True AMCG00006067
TU196327 other downstream 594216 14782631 ~ 14784006 (-) False AMCG00006043
TU196273 other downstream 695261 14679797 ~ 14682961 (-) True AMCG00006037
TU196220 other downstream 868608 14509233 ~ 14509614 (-) True G155770
TU196147 other downstream 1037559 14336891 ~ 14340663 (-) True AMCG00006013
TU196074 other downstream 1206615 14168090 ~ 14171607 (-) False AMCG00005997
TU196602 other upstream 42851 15433432 ~ 15436866 (-) True G156088
TU196604 other upstream 98821 15489402 ~ 15491642 (-) False G156088
TU196760 other upstream 563495 15954076 ~ 15957090 (-) True G156206
TU196870 other upstream 1063788 16454369 ~ 16462159 (-) False AMCG00006083
TU196884 other upstream 1115012 16505593 ~ 16518111 (-) False AMCG00006118

Expression Profile