RNA id: AMCG00006081


Basic Information

Item Value
RNA id AMCG00006081
length 705
RNA type mRNA
GC content 0.55
exon number 6
gene id AMCG00006081
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15397252 ~ 15400964 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTACCGCGGAGCGCATTTTTTCCGAGGGGGAGAACTGCAAGCAAGTGTGGACCGATGCCAGCGCCGACTACAACCCCACGGACACGCACCTGGAGATCCTGGGCAAGCCGGTGATGGAGCGCTGGGAGACGCCGTACATGCATGAGCTGGCGACGGTCGCGGCATCCAAGGGGGGACGTGTCCTGGAGATTGGCTTTGGAATGGCCATTGCGGCCACCAAAATCGAGTCCTTCCCCATCGAGGAGCACTGGATCATCGAATGCAACGACGGAGTCTTCAAGAGGCTGGAGGAGTGGGCCAAGAAACAGCCCCACAAGGTTGTGCCACTCAAAGGGATGTGGGAGGATGTTGTCCCAACCCTGCCTGATGGACATTTTGATGGCATTCTGTACGATACTTACCCGCTCTCTGAAGAGACCTGGCACACTCACCAGTTCAACTTCATCAAGGGACATGCACACAGGCTACTGAAGAAGGGCGGGGTCCTCACTTACTGCAATCTGACGTCCTGGGGCGAGCTGCTCAAGTCCAAGTTTGACAACATCGAGAAAATGTTCCAGGAGACCCAGGTACCCCAGCTGACCGAGGCCGGCTTCAAGAAGGAGAACATCAGCACCAGCTTACTAGACATCGCCCCTCCTGCTGAGTGTAAATACTACTCCTTCAATAAGATGATCACTCCAACCATCATCAAACAGTGA

Function

GO:

id name namespace
GO:0006601 creatine biosynthetic process biological_process
GO:0032259 methylation biological_process
GO:0030731 guanidinoacetate N-methyltransferase activity molecular_function

KEGG:

id description
K00542 GAMT; guanidinoacetate N-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196530 lncRNA downstream 29611 15366104 ~ 15367641 (-) True G156028
TU196512 lncRNA downstream 66706 15272813 ~ 15330546 (-) True G156014
TU196499 lncRNA downstream 79075 15295713 ~ 15318177 (-) True G156003
TU196497 lncRNA downstream 98852 15257499 ~ 15298400 (-) False G156003
TU196553 lncRNA upstream 17014 15417978 ~ 15423850 (-) True G156048
TU196556 lncRNA upstream 26344 15427308 ~ 15431930 (-) True G156049
TU196599 lncRNA upstream 34160 15435124 ~ 15436866 (-) False G156088
TU196629 lncRNA upstream 180893 15581857 ~ 15584766 (-) True G156104
TU196640 lncRNA upstream 214598 15615562 ~ 15615787 (-) True G156113
AMCG00006080 mRNA downstream 6671 15378222 ~ 15390581 (-) True AMCG00006080
AMCG00006101 mRNA downstream 215935 15161321 ~ 15181317 (-) True AMCG00006101
AMCG00006099 mRNA downstream 273924 15104332 ~ 15123328 (-) True AMCG00006099
AMCG00006094 mRNA downstream 293720 15098331 ~ 15103532 (-) True AMCG00006094
AMCG00006100 mRNA downstream 308344 15080401 ~ 15088908 (-) True AMCG00006100
AMCG00006079 mRNA upstream 68277 15469241 ~ 15480318 (-) True AMCG00006079
AMCG00006082 mRNA upstream 82198 15483162 ~ 15488681 (-) True AMCG00006082
AMCG00006068 mRNA upstream 95789 15496753 ~ 15529324 (-) True AMCG00006068
AMCG00006067 mRNA upstream 143874 15544838 ~ 15559349 (-) True AMCG00006067
AMCG00006069 mRNA upstream 164498 15565462 ~ 15574687 (-) True AMCG00006069
TU196327 other downstream 613246 14782631 ~ 14784006 (-) False AMCG00006043
TU196273 other downstream 714291 14679797 ~ 14682961 (-) True AMCG00006037
TU196220 other downstream 887638 14509233 ~ 14509614 (-) True G155770
TU196147 other downstream 1056589 14336891 ~ 14340663 (-) True AMCG00006013
TU196074 other downstream 1225645 14168090 ~ 14171607 (-) False AMCG00005997
TU196602 other upstream 32468 15433432 ~ 15436866 (-) True G156088
TU196604 other upstream 88438 15489402 ~ 15491642 (-) False G156088
TU196760 other upstream 553112 15954076 ~ 15957090 (-) True G156206
TU196870 other upstream 1053405 16454369 ~ 16462159 (-) False AMCG00006083
TU196884 other upstream 1104629 16505593 ~ 16518111 (-) False AMCG00006118

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00007425 False 987 mRNA 0.49 6 NC_007122.7 5855923 ~ 5865744 (-)