RNA id: AMCG00006083


Basic Information

Item Value
RNA id AMCG00006083
length 5582
RNA type mRNA
GC content 0.41
exon number 3
gene id AMCG00006083
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 16454284 ~ 16462165 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAATAGCCGCCCTGCGGTGGGctcccacacatacacacacaacaaaacattaaGTAAAGAAGTGACGTCGTGGGACTTTCACGAACGAACATCTATCATTGAAACCAGCGGATTTAACGTCTGCTCGGTTtgaacaacttttttttttgtttgtactaaACGAAGGGAAGGCAATGGGGAAAATGGAGATTCCTGTGGCTTTATTCACATTGTTGGTACTCTGTGCTCGCTCGGTGGCGGAAAGTGACAATTCACCACTGACACCCATCTTAGAAACAACCACCGTCAACAAAGCCGTCAATCTGCCGACGAAGCCTCACAACTCGTCGGTGTCTCACAATGTGACGGAGAAAGGCGACGTGATCCACAGCCTGAACGTGGACAGCTCGATGATCCGCAGGGCCCTGTACGTCCTCATGGGCATTACTGTGATCGGGGTGCTGTACTTCATTGCCAGGGCTGTCAGGTTGAAGAAAACATCGCAGAGAAAGAAGTACGGGCTGCTGTCTAATTACGATGAAAATGTGGAGATGGCGCCGTTGGAAAGCGACGAGGAAGACACGACTGTTTACGAAGCCAAGACCTTGAGGAGATGAGCGGGTCTGTGATCCATGGGAAAAACCTGAAGACTGGAAGGATGAAACATTCCCAGCTTTATTTTTCTACTactccaattttttttttttttttttaatcgttgttctctcccctcccctctccttccAGAGAGTTACAGATGTttttcagagattttttttctctctttttttatgtaacaaACTTTAATATATGgatttaaactaaaactaaaaaaatatggtgaacaagaaaaagaatgaCGGTGGAGAACGGTGACATTGGTGACTAGATGGATCCTCTTATTGACTTCTAAAACCGAGGATCTTTATTCACAGGAAGAGGAGCGTGGTAGTTATTTTGCCTGGGCTGAAATCGACTGGATGTCTAAGTTGCCAAAACGATTTGCATGAAGTTAGTCAGTGATTTGCCCTTTTCAAATGTCCCCTGTTGCAACAAATAACCTAATCCACTAATTGATTCCAGTGTACAAGCCTAAGACTCACATAAGACTTAAATATGTctggattttttaaatcttttttttttttttgatgaagCACATGTTTTCCAGAACAATATTTCCCTCacgtggggggaaaaaagaataataacaaaatactgGATCTTCAGTGAATTTGCATTGTCAAACAAGGTGAATACCATCCTGTTTAGCTGCCGTTTTCCCCTCCGTGCCTTGATCTGTGGTACAGATTATGATTCCAGATGGGTCAATTTTCTCAGTTGGGAGTCCACAGACCAGGACAGTGCCGCTGATCGATTGTATCTTCACCGAAGTCAAGAAAAAAGCCAATACGAGGCTGAGCAACTTTTCTCTGCTTGTAGTAGTTGCTGATAAGCCTGTCATCGCCTGTTTAAACCACTTAAAGCGTATctgtttattattcataaaagGAACTCTGCCTCAAGGGCCTTAATTCGAAAATCCATACGCAATTTTCAGAGGTAAGAAAAGTACGGCTGTTTCCTCTGAGCTCTTTATTGATCTTTATCTCCAGATTAAGATCCTTAAAGACGGAACTGCTAAAAATAATCCCACAGATAAGGTGTCAAGaagaaaaccacaacaaaaaaattgattgattgcggGATTGGCTGCAGATTTccatcaaatgcattttgtgtcaaCTAATACAACAGTAACCCGTAGagctttctttattatttattttgtttttggtttctatttgtattttgtgttattaattacTGCAAAGGGGGTGTCTATCTGAAGGGTTTTCTGGTGTTTCCCGTCACTTGCTTCACAGCCTGTTTCATGTGTGATTCCTTGTTAATGGGAGACAACATAAAAAAGAATGGAAAGTAATGTACAATCAGGAGGCAAATAATGGTTTCAGTTCTTCTTTCTGATCAATCTCTGCCTTATATGACCCCTCCCCCACCGATACTCCACAGCGCCTCCATCTCCCTGCCTCAATCGCTGCATTTAAATGTccaacattttctgaaaatggcTTTCCTAATAATTCCTGTATCCAAAATGAGATTGGAAAGCGTATTCCAATTCTAAAAAACATTCCATTTTGTAAAcgtacttcttttttttttggttgttactGCTGCCAGAAAATGTGTGATTAATGTACAGCACCTGCAGATGGACCCATTCGGCCGACTGCTGTATCTGCACAAAGTGCCCTAACTTTTACAGGGGTGGATTTTCCTATCTATACCAGAACTTGACCTGGATTGTtatgcaaacacaaaaaggtGTCTTTCTCAGAAAACCAATTCTGTTATCATATTGTTCATTCTGGGGAAATAATGGCCTCCTGTAAATACTGCTAATCAGTGCAGGATGCATTTCCATGTCCAAATACAGTAGCTACAGTCAATAAAGCCATAAAATAGACatcacaaaacaattaataGGAAGTCCTCTGTAAAGTAGACTAAGCCATCTATCTGTGTGAACTGAACCTTAGACTTTATCATAGAAAGATTAGGCAGGGAAGTGGAATTGTTTCTCTGAAAATGACACGtttacttaattacttatttgcacttcagttttttaaatcCGGTAttgtctgtatctgtatctgtatttgcCAGTTTGGTCACTTGAGACATCCTGCATTCTAAGACCTGGTAAATTTTGCCTGTATGTGTCTAACGCTATGAACACTTggtgtgaattttttttttgtagttctttctatattttctgtttttttttttttttaaataacccaACCTTCTTGTAAAACCGTAAAAGACAAAAGTGAATATTCTATTCTCATTGCTCTGGATgcgatttttctttttaaacacattctgaagattatatatatatataatttaaatatccaATTCAGTGGAGGACTGGAAAGTCATCTAGCTCTGATAAGCTGTTAACTACTGCTGCCCTTATGTCAAGATGTTTGCCGTTGTaccatttttgttattgtggtCTGTCTTGTAGTATCCCCTGTTGCGATTGACAATAATGAGCCCTCCCAGCCTATTAGAAATCGCTTCATGCATCAGAAGATCATGCATatacatacttttttattttttttatttatctttccatCTTTCCTACCTGCTTTCATACAGAACTGAATGTAAAGGACTAGTGGGACTATAATGAAGCTTTCTTCAGAACGGATAGCATCCCTGACAGCATCCGAGAACTGAAATGTGACCGTAAATAACCGagtttgtaatgctttaattgCTGAATTCCTGTAGATCCTTTAACGTGAGCTGGACAGTTCTTCAGTATTTAACCCCAATGAGTGAACTCcgcagtgtgtttgtgtagagaTCATTCGAAAGCCACATTTTCCTGGTTTACTGTATTTCTTAGGCTAGGGGCGCGGGTGTTCAAAAGGCACCCATCTGACCCTTCGTATAACTGGATGCCAAACCTCTCTCCAGTGATCACGGTGGGATGAATTCAGCCCACCATGCTGAAATACCcgtttttgtttgcatttgaagCCTCTGTGTCGGTTGAATTGCCCAGCTGCTGAGGTGCATTGATTTAACAGGTGCTCAATAGTGTTTGCCAAATATTTAATCCAGAGCTGGGCAGGGTCCCAAGGGGGCGCATGGGAAAACTGCTTGGCACCCAGTTCTCTGTTTCAGGTAGAGCGCTCGTACCAGCATGTTAATCAGTAATCTGCCATTTTCCAAACACAATTGCGTCTATGTTGCGTTTAAATAGCGCGCAGCAGTGTGACTGCAAAGAGCAATGAAGTATTTTGACTAGGGCTATGCTGAAACGCAGGTCGCTCATATTAAAGACGCCACCTTCCATTCATAAAGATGGGTAATTGTAATGAATTACTTGTCAGTCAAGGTAAGCGTAATTGAGCATAACACGCCATCCTCACTCAAGTGGTGTTAATGAGATCTTCAACCCAGTGGGCCTGGAATAGTCTCACTTGAGTGCTGTTGTAGTTCTCGGTGTCAGGCTTTTGAGCAGTACCTTCTTGGGGAGACCTCGGCCCTgctggtgggggtggggaatgTATCGGACTGGATTTGGAATCGTGGAACTCAGATTTTCAGATCTTAATTCACAAAGCAAGTGCAGGACTGGGCATAGGCCACTAGGTTTGCCCATTAAATATTGAGCAACTGCTGTTTTATAGCGTTAATAAACTCATAATTATGGTATACGCAGTCCGTGCTATGCGGGAAGTCGGGATGGGAAACCATTTAAGACCAAATAGTAGTTAAATACAGATGAGGCACCCAAATCTATGTGCACTCCATATATTGTACACTGCGGTCTTTCAttatttgatatacatttttctccATCTGGATTTTTAGCACTGTTGGTTTATCCATCATGGGGGAAAAGTTGCCTAAAACTTGAGGGAATAATGGATGTCATATTTGAATCATCTGGACCAAACTGTTATACGAATGTGTATTATTCCAGTTGCCAAGTATTAAGATTCCTTTCCATTTGTGAGAGCTGGGTGGACATGAGAGAGTCCTGTCTCAAAAATACGACGGGGATCCAAACTGTTTTTTGCAAGTTGATATTCTTTGTTTGAATGCAGTAACACTGGCCTTCTCCCCAGCCTTTGTAAGTCAACCCTGATTTAAATGGTTCTTTTCCCACAACAACATGCTGTTCTTGATATGTATGGTTGTTCTTGTCTGTGGGCCatgaatttctgtttttttttaagctggtTTGTTTGGAGCAGTTCACCACGTATCACCAAAATGAAACTGAAGGCCTGAGCTGCTCGCACAGACCCGTACAAATGTGAATGTAGGGACACGTTCCACTGATTCTTCGATCTTCTCAGAGTTCTATTTTTATACAGGGGACaaaattcactttatttttataaggtGATTAATTTttctaatgtttgttttttggaggaTGAATAAACATCTGATGTGGGATTGCTGACATGATAAAATGTCCCCTGCTTTGTTGAAGCCCTTAACCATTTCTGGTCACATTCCTGGGATTCTTTGGCCGAGACGCTGCTGGTTGGGAATGTCAAAAGATTTGCCTGTTTTATACTCCAGTTTGATACGGCCAATTCCTCCCTAGTCATTAGTGACCTAGGAAAGTACAGAGGCATCCAATGAGATGCATGGCAAAGGATGGCTAGGCTAGGGTCTTATTCCTGAATGTTGAAAATGTCTGCGGTTAGTCATGATGTACATTTAAGGAGGTGGTGGGGGAGTGGCCAAATGCAGTACttggcatttaaaataaaaaaaagtgattgcACTGTCTTAAATAGGGACCAATGGGAATTAATTtgcgtttttgttttaatgaactcCGTACAGACCCTGGGGTATGCGCAGCATGGTGGCAAGATGAGAGAACCTATTTTGCTGATGATCAGCAGCTTGTGTCACGCATAACCTTATCAGCTCTTTCTTATTAAAACTGATTTTGACTAAAGACTCCCCTTTGTTGTGGCTTTTTCTTCTCTATTTGAAGAATGGATCAAGCAGAGGCACGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196787 lncRNA downstream 382756 16066669 ~ 16071528 (-) True G156228
TU196784 lncRNA downstream 391212 16062733 ~ 16063072 (-) True G156225
TU196762 lncRNA downstream 454245 15994787 ~ 16000039 (-) True G156207
TU196754 lncRNA downstream 506757 15947208 ~ 15947527 (-) True G156203
TU196640 lncRNA downstream 838497 15615562 ~ 15615787 (-) True G156113
TU196920 lncRNA upstream 189375 16651540 ~ 16671387 (-) True G156341
TU196921 lncRNA upstream 207636 16669801 ~ 16680772 (-) False G156341
TU196924 lncRNA upstream 212633 16674798 ~ 16676047 (-) True G156344
TU196965 lncRNA upstream 402933 16865098 ~ 16922863 (-) True G156378
TU197318 lncRNA upstream 1670164 18132329 ~ 18137505 (-) True G156668
AMCG00006110 mRNA downstream 166956 16277086 ~ 16287328 (-) True AMCG00006110
AMCG00006109 mRNA downstream 245606 16190630 ~ 16208678 (-) True AMCG00006109
AMCG00006108 mRNA downstream 273748 16155306 ~ 16180536 (-) True AMCG00006108
AMCG00006115 mRNA downstream 378558 16073363 ~ 16075726 (-) True AMCG00006115
AMCG00006114 mRNA downstream 423107 16024475 ~ 16031177 (-) True AMCG00006114
AMCG00006084 mRNA upstream 1847 16464012 ~ 16487227 (-) True AMCG00006084
AMCG00006119 mRNA upstream 36487 16498652 ~ 16500578 (-) True AMCG00006119
AMCG00006118 mRNA upstream 43199 16505364 ~ 16521689 (-) True AMCG00006118
AMCG00006120 mRNA upstream 66057 16528222 ~ 16566157 (-) True AMCG00006120
AMCG00006117 mRNA upstream 165808 16627973 ~ 16637966 (-) True AMCG00006117
TU196760 other downstream 497194 15954076 ~ 15957090 (-) True G156206
TU196604 other downstream 962642 15489402 ~ 15491642 (-) False G156088
TU196602 other downstream 1017418 15433432 ~ 15436866 (-) True G156088
TU196327 other downstream 1670278 14782631 ~ 14784006 (-) False AMCG00006043
TU196273 other downstream 1771323 14679797 ~ 14682961 (-) True AMCG00006037
TU196884 other upstream 43428 16505593 ~ 16518111 (-) False AMCG00006118
TU196919 other upstream 207636 16669801 ~ 16671387 (-) False G156341
TU196984 other upstream 485832 16947997 ~ 16950117 (-) False AMCG00006127
TU197609 other upstream 2813035 19275200 ~ 19293820 (-) True G156907
TU197648 other upstream 2986766 19448931 ~ 19451861 (-) False AMCG00006201

Expression Profile