RNA id: TU196870


Basic Information

Item Value
RNA id TU196870
length 5491
RNA type TUCP
GC content 0.41
exon number 3
gene id AMCG00006083
representative False

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 16454284 ~ 16462165 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCGCCCTGCGGTGGGctcccacacatacacacacaacaaaacattaaGTAAAGAAGTGACGTCGTGGGACTTTCACGAACGAACATCTATCATTGAAACCAGCGGATTTAACGTCTGCTCGGTTtgaacaacttttttttttgtttgtactaaACGAAGGGAAGGCAATGGGGAAAATGGAGATTCCTGTGGCTTTATTCACATTGTTGGTACTCTGTGCTCGCTCGGTGGCGGAAAGTGACAATTCACCACTGACACCCATCTTAGAAACAACCACCGTCAACAAAGCCGTCAATCTGCCGACGAAGCCTCACAACTCGTCGGTGTCTCACAATGTGACGGAGAAAGGCGACGTGATCCACAGCCTGAACGTGGACAGCTCGATGATCCGCAGGGCCCTGTACGTCCTCATGGGCATTACTGTGATCGGGGTGCTGTACTTCATTGCCAGGGCTGTCAGGTTGAAGAAAACATCGCAGAGAAAGAAGTACGGGCTGCTGTCTAATTACGATGAAAATGTGGAGATGGCGCCGTTGGAAAGCGACGAGGAAGACACGACTGTTTACGAAGCCAAGACCTTGAGGAGATGAGCGGGTCTGTGATCCATGGGAAAAACCTGAAGACTGGAAGGATGAAACATTCCCAGCTTTATTTTTCTACTactccaattttttttttttttttttaatcgttgttctctcccctcccctctccttccAGAGAGTTACAGATGTttttcagagattttttttctctctttttttatgtaacaaACTTTAATATATGgatttaaactaaaactaaaaaaatatggtgaacaagaaaaagaatgaCGGTGGAGAACGGTGACATTGGTGACTAGATGGATCCTCTTATTGACTTCTAAAACCGAGGATCTTTATTCACAGGAAGAGGAGCGTGGTAGTTATTTTGCCTGGGCTGAAATCGACTGGATGTCTAAGTTGCCAAAACGATTTGCATGAAGTTAGTCAGTGATTTGCCCTTTTCAAATGTCCCCTGTTGCAACAAATAACCTAATCCACTAATTGATTCCAGTGTACAAGCCTAAGACTCACATAAGACTTAAATATGTctggattttttaaatcttttttttttttttgatgaagCACATGTTTTCCAGAACAATATTTCCCTCacgtggggggaaaaaagaataataacaaaatactgGATCTTCAGTGAATTTGCATTGTCAAACAAGGTGAATACCATCCTGTTTAGCTGCCGTTTTCCCCTCCGTGCCTTGATCTGTGGTACAGATTATGATTCCAGATGGGTCAATTTTCTCAGTTGGGAGTCCACAGACCAGGACAGTGCCGCTGATCGATTGTATCTTCACCGAAGTCAAGAAAAAAGCCAATACGAGGCTGAGCAACTTTTCTCTGCTTGTAGTAGTTGCTGATAAGCCTGTCATCGCCTGTTTAAACCACTTAAAGCGTATctgtttattattcataaaagGAACTCTGCCTCAAGGGCCTTAATTCGAAAATCCATACGCAATTTTCAGAGGTAAGAAAAGTACGGCTGTTTCCTCTGAGCTCTTTATTGATCTTTATCTCCAGATTAAGATCCTTAAAGACGGAACTGCTAAAAATAATCCCACAGATAAGGTGTCAAGaagaaaaccacaacaaaaaaattgattgattgcggGATTGGCTGCAGATTTccatcaaatgcattttgtgtcaaCTAATACAACAGTAACCCGTAGagctttctttattatttattttgtttttggtttctatttgtattttgtgttattaattacTGCAAAGGGGGTGTCTATCTGAAGGGTTTTCTGGTGTTTCCCGTCACTTGCTTCACAGCCTGTTTCATGTGTGATTCCTTGTTAATGGGAGACAACATAAAAAAGAATGGAAAGTAATGTACAATCAGGAGGCAAATAATGGTTTCAGTTCTTCTTTCTGATCAATCTCTGCCTTATATGACCCCTCCCCCACCGATACTCCACAGCGCCTCCATCTCCCTGCCTCAATCGCTGCATTTAAATGTccaacattttctgaaaatggcTTTCCTAATAATTCCTGTATCCAAAATGAGATTGGAAAGCGTATTCCAATTCTAAAAAACATTCCATTTTGTAAAcgtacttcttttttttttggttgttactGCTGCCAGAAAATGTGTGATTAATGTACAGCACCTGCAGATGGACCCATTCGGCCGACTGCTGTATCTGCACAAAGTGCCCTAACTTTTACAGGGGTGGATTTTCCTATCTATACCAGAACTTGACCTGGATTGTtatgcaaacacaaaaaggtGTCTTTCTCAGAAAACCAATTCTGTTATCATATTGTTCATTCTGGGGAAATAATGGCCTCCTGTAAATACTGCTAATCAGTGCAGGATGCATTTCCATGTCCAAATACAGTAGCTACAGTCAATAAAGCCATAAAATAGACatcacaaaacaattaataGGAAGTCCTCTGTAAAGTAGACTAAGCCATCTATCTGTGTGAACTGAACCTTAGACTTTATCATAGAAAGATTAGGCAGGGAAGTGGAATTGTTTCTCTGAAAATGACACGtttacttaattacttatttgcacttcagttttttaaatcCGGTAttgtctgtatctgtatctgtatttgcCAGTTTGGTCACTTGAGACATCCTGCATTCTAAGACCTGGTAAATTTTGCCTGTATGTGTCTAACGCTATGAACACTTggtgtgaattttttttttgtagttctttctatattttctgtttttttttttttttaaataacccaACCTTCTTGTAAAACCGTAAAAGACAAAAGTGAATATTCTATTCTCATTGCTCTGGATgcgatttttctttttaaacacattctgaagattatatatatatataatttaaatatccaATTCAGTGGAGGACTGGAAAGTCATCTAGCTCTGATAAGCTGTTAACTACTGCTGCCCTTATGTCAAGATGTTTGCCGTTGTaccatttttgttattgtggtCTGTCTTGTAGTATCCCCTGTTGCGATTGACAATAATGAGCCCTCCCAGCCTATTAGAAATCGCTTCATGCATCAGAAGATCATGCATatacatacttttttattttttttatttatctttccatCTTTCCTACCTGCTTTCATACAGAACTGAATGTAAAGGACTAGTGGGACTATAATGAAGCTTTCTTCAGAACGGATAGCATCCCTGACAGCATCCGAGAACTGAAATGTGACCGTAAATAACCGagtttgtaatgctttaattgCTGAATTCCTGTAGATCCTTTAACGTGAGCTGGACAGTTCTTCAGTATTTAACCCCAATGAGTGAACTCcgcagtgtgtttgtgtagagaTCATTCGAAAGCCACATTTTCCTGGTTTACTGTATTTCTTAGGCTAGGGGCGCGGGTGTTCAAAAGGCACCCATCTGACCCTTCGTATAACTGGATGCCAAACCTCTCTCCAGTGATCACGGTGGGATGAATTCAGCCCACCATGCTGAAATACCcgtttttgtttgcatttgaagCCTCTGTGTCGGTTGAATTGCCCAGCTGCTGAGGTGCATTGATTTAACAGGTGCTCAATAGTGTTTGCCAAATATTTAATCCAGAGCTGGGCAGGGTCCCAAGGGGGCGCATGGGAAAACTGCTTGGCACCCAGTTCTCTGTTTCAGGTAGAGCGCTCGTACCAGCATGTTAATCAGTAATCTGCCATTTTCCAAACACAATTGCGTCTATGTTGCGTTTAAATAGCGCGCAGCAGTGTGACTGCAAAGAGCAATGAAGTATTTTGACTAGGGCTATGCTGAAACGCAGGTCGCTCATATTAAAGACGCCACCTTCCATTCATAAAGATGGGTAATTGTAATGAATTACTTGTCAGTCAAGGTAAGCGTAATTGAGCATAACACGCCATCCTCACTCAAGTGGTGTTAATGAGATCTTCAACCCAGTGGGCCTGGAATAGTCTCACTTGAGTGCTGTTGTAGTTCTCGGTGTCAGGCTTTTGAGCAGTACCTTCTTGGGGAGACCTCGGCCCTgctggtgggggtggggaatgTATCGGACTGGATTTGGAATCGTGGAACTCAGATTTTCAGATCTTAATTCACAAAGCAAGTGCAGGACTGGGCATAGGCCACTAGGTTTGCCCATTAAATATTGAGCAACTGCTGTTTTATAGCGTTAATAAACTCATAATTATGGTATACGCAGTCCGTGCTATGCGGGAAGTCGGGATGGGAAACCATTTAAGACCAAATAGTAGTTAAATACAGATGAGGCACCCAAATCTATGTGCACTCCATATATTGTACACTGCGGTCTTTCAttatttgatatacatttttctccATCTGGATTTTTAGCACTGTTGGTTTATCCATCATGGGGGAAAAGTTGCCTAAAACTTGAGGGAATAATGGATGTCATATTTGAATCATCTGGACCAAACTGTTATACGAATGTGTATTATTCCAGTTGCCAAGTATTAAGATTCCTTTCCATTTGTGAGAGCTGGGTGGACATGAGAGAGTCCTGTCTCAAAAATACGACGGGGATCCAAACTGTTTTTTGCAAGTTGATATTCTTTGTTTGAATGCAGTAACACTGGCCTTCTCCCCAGCCTTTGTAAGTCAACCCTGATTTAAATGGTTCTTTTCCCACAACAACATGCTGTTCTTGATATGTATGGTTGTTCTTGTCTGTGGGCCatgaatttctgtttttttttaagctggtTTGTTTGGAGCAGTTCACCACGTATCACCAAAATGAAACTGAAGGCCTGAGCTGCTCGCACAGACCCGTACAAATGTGAATGTAGGGACACGTTCCACTGATTCTTCGATCTTCTCAGAGTTCTATTTTTATACAGGGGACaaaattcactttatttttataaggtGATTAATTTttctaatgtttgttttttggaggaTGAATAAACATCTGATGTGGGATTGCTGACATGATAAAATGTCCCCTGCTTTGTTGAAGCCCTTAACCATTTCTGGTCACATTCCTGGGATTCTTTGGCCGAGACGCTGCTGGTTGGGAATGTCAAAAGATTTGCCTGTTTTATACTCCAGTTTGATACGGCCAATTCCTCCCTAGTCATTAGTGACCTAGGAAAGTACAGAGGCATCCAATGAGATGCATGGCAAAGGATGGCTAGGCTAGGGTCTTATTCCTGAATGTTGAAAATGTCTGCGGTTAGTCATGATGTACATTTAAGGAGGTGGTGGGGGAGTGGCCAAATGCAGTACttggcatttaaaataaaaaaaagtgattgcACTGTCTTAAATAGGGACCAATGGGAATTAATTtgcgtttttgttttaatgaactcCGTACAGACCCTGGGGTATGCGCAGCATGGTGGCAAGATGAGAGAACCTATTTTGCTGATGATCAGCAGCTTGTGTCACGCATAACCTTATCAGCTCTTTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196787 lncRNA downstream 382841 16066669 ~ 16071528 (-) True G156228
TU196784 lncRNA downstream 391297 16062733 ~ 16063072 (-) True G156225
TU196762 lncRNA downstream 454330 15994787 ~ 16000039 (-) True G156207
TU196754 lncRNA downstream 506842 15947208 ~ 15947527 (-) True G156203
TU196640 lncRNA downstream 838582 15615562 ~ 15615787 (-) True G156113
TU196920 lncRNA upstream 189381 16651540 ~ 16671387 (-) True G156341
TU196921 lncRNA upstream 207642 16669801 ~ 16680772 (-) False G156341
TU196924 lncRNA upstream 212639 16674798 ~ 16676047 (-) True G156344
TU196965 lncRNA upstream 402939 16865098 ~ 16922863 (-) True G156378
TU197318 lncRNA upstream 1670170 18132329 ~ 18137505 (-) True G156668
AMCG00006110 mRNA downstream 167041 16277086 ~ 16287328 (-) True AMCG00006110
AMCG00006109 mRNA downstream 245691 16190630 ~ 16208678 (-) True AMCG00006109
AMCG00006108 mRNA downstream 273833 16155306 ~ 16180536 (-) True AMCG00006108
AMCG00006115 mRNA downstream 378643 16073363 ~ 16075726 (-) True AMCG00006115
AMCG00006114 mRNA downstream 423192 16024475 ~ 16031177 (-) True AMCG00006114
AMCG00006084 mRNA upstream 1853 16464012 ~ 16487227 (-) True AMCG00006084
AMCG00006119 mRNA upstream 36493 16498652 ~ 16500578 (-) True AMCG00006119
AMCG00006118 mRNA upstream 43205 16505364 ~ 16521689 (-) True AMCG00006118
AMCG00006120 mRNA upstream 66063 16528222 ~ 16566157 (-) True AMCG00006120
AMCG00006117 mRNA upstream 165814 16627973 ~ 16637966 (-) True AMCG00006117
TU196760 other downstream 497279 15954076 ~ 15957090 (-) True G156206
TU196604 other downstream 962727 15489402 ~ 15491642 (-) False G156088
TU196602 other downstream 1017503 15433432 ~ 15436866 (-) True G156088
TU196327 other downstream 1670363 14782631 ~ 14784006 (-) False AMCG00006043
TU196273 other downstream 1771408 14679797 ~ 14682961 (-) True AMCG00006037
TU196884 other upstream 43434 16505593 ~ 16518111 (-) False AMCG00006118
TU196919 other upstream 207642 16669801 ~ 16671387 (-) False G156341
TU196984 other upstream 485838 16947997 ~ 16950117 (-) False AMCG00006127
TU197609 other upstream 2813041 19275200 ~ 19293820 (-) True G156907
TU197648 other upstream 2986772 19448931 ~ 19451861 (-) False AMCG00006201

Expression Profile