RNA id: AMCG00006086


Basic Information

Item Value
RNA id AMCG00006086
length 9736
RNA type mRNA
GC content 0.41
exon number 15
gene id AMCG00006086
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15789347 ~ 15818856 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCACGGAGGGTTTTCAGTACCGGGCGCTCTACGTTTACAACAAAGACTGGGAGGAGGACATTGACCTCCAGCCCGGGGACCTTCTGATCGTCAACAAGGCCTCTCTGTTGTCCCTGGGCTTCAAGGAAGGTGACGAAGAACATCCCGAACGGCTGGGCTGGATGGTGGGGGTGAATGAGCGCACAAAGCAGAGGGGCGACTTTCCCGGGACCTATGTGCAGTACATTGGGCCTATCAAGATGTCACTGCCACCCAATCAGCCTCGCTTCCAGAGACCCCTGCCCGCCGCCCCCAGGCCTGAGCCTCCGCCTGTGCATCAAGCCATCTCTATCCTGGATTTGACGGAGCAGTTTGCACCACCCGAAAGTGCTCCCCCAATTATGGTCAAGTTGGTGGAAGCCATCGAGAAGAAAGGTCTGGACAGTGAGACCCTGTACCGGACGTCTGTCTCCTCAGCTGGCTTTGATCACAGACTGAGTCTCGAGCTGTCTACTGGGAACGTGGGACAATTTGACATCCAGGTGCTGACTGAGGCTCTCAAAGGGTACCTGCAGGCTCTGCCCACCCCGGTCATCCCAGCGTCCGTCTATCCAGACCTCCAGACCACACTGCAGCAAGGAACAGAAGCTGTGAGGTTGGAGAACTGTAAACCGCTGATGTCAGTGCTGGAGTCCCCGGCCGTGCCCCTGCAGAACCTCCTCACGCTGCAGTACCTGCTCCGCCACCTGGGCAAAGTGTGCCAGAACTCAGAGAGAAACGGCCTGGACGGCCCCACCCTCGGCCAGATCTTCGGCCCACTGCTGCTCCGGCTTGCTGGCACTGGATTGGAAGTGAGTCAGGACCTCCCGGTTCTGGTGCTGGAGATATTGTTGGCAGAGAGGACCTGGGAGCAGGAACAGAGCCCACCAGCTCTGCCTCCGAAACCTCCCAAGACCAAGGCCTTGACCAGCTCGCTCACCAATGGCAACAGTAGCCTCCTGGCCGATGCAGAATGGTACTGGGGTGAAATTTCCAGAGAGGAAGTGAATGAGAAAATGCGAGATACACCTGACGGCACTTTTCTGGTTCGGGATGCTTCGAGCAAAGTTCAAGGAGAGTACACCCTCACCCTCAGGAAAGGAGGGAACAACAAGCTGATCAAAATTTTCCATCGAGGGGGGAAGTATGGATTCTCTGAGCCTCTGACGTTCCTCTCTGTGGTAGAGCTGATCAATCACTATCGCCACGAGTCACTGGCACAGTACAACGCCAAACTGGACACCCGGCTTTTGTACCCCATCTCCAAGTACCAACAGGACCAGGTGGTGAAGGAGGACAGTATCGAGGCAGTAGGGGAACAACTACGGGTTTATCATGAGCAGTACCAGGAGAAGAGTCGCGAATACGATATCCTGTACGAGGAATACACCCGCACCTCCCAGGAGCTACAGATGAAGAGAACCGCCATCGAGGCCTTCAACGAGACCATTAAGATCTTCGAGGAGCAATGCGAGACACAGGAGCGCTACAGCAAGGAGTATATTGAGAGGTTCCGCCGAGAAGGCAATGACAAAGAGATCCAGAGGATCCAGAGCAACTCAGAGAAGCTGAAGTCTCGGGTGACCGAAATCCACGACAGCAAGAGGAAGCTGGAGCAGGACCTGAAGAACCAGGCGGCGGACAACCGGGAGATCGACAAGCGCATGAACAGCCTGAAGCCCGACCTCATGCAGCTGAGGAAGATTCGTGACCAGTACCTGGTGTGGTTGACACAGAAGGGCACCAGGCAGAGGAAGATCAACGAGTGGCTAGGGATCAAGAACGAAGCTGAGGATCTGTACTCCATGATGGACGATGAGGAGGACCTACCCCACCATGACGAACGCACCTGGTATGTGGGCGACATCAAGCGTGCACAGGCCGAGGAGCTGCTGAGGGGCAAGCGGGACGGCACCTTCCTCATTCGCGACAGCCAGTCACAGAAGGGCTCCTTCGCCTGCTCAGTGGTCGTGGATGGCGATATCAAGCACTGCGTGATCTACAAGACCGTCACGGGATATGGATTTGCAGAGCCGTACAACCTCTACGCTTCCCTGAAAGAGCTGGTCCTCCACTATAAGCACACCTCCCTGGTCCAGCACAATGACTCTCTGAATGTAACGCTggcctgtcctgtcctgtcccagCAGCCCAGGTGAACGGCTGAGTGCCAACCAACATCCTCCGCATCCAAGATGaaactggggaaaaaagaaacaaaaaggaaaacaaaaatatgccaacttttatatataaaagatgAACCCACACCAACAACAAACGACcttcatacaaaaacaaaagaagcacaCAAATTTAAGGCCGATCATGTCTTGTGTAGAGGTAGGGTTAGCGTGAACTCTTAAAACTCTAGTCCCCTGCAGTAAAGCCCAAGGAAGTGACTCCCGTCTTCATCCTAGCATAAAACCCTTTCTATATCAAAGGAAGTGGATCAGACCTTGTCCGGAGGTTGCACTGTCGTGGATACGGGCATCCACTAACAAAGGAGGGCCCccgtttgttttcttgtttgtttttaatccctGGATTTGTTAAGGATTTTGCAAAGcttcatttttccttttaaacgGCTCAAGAACAGCACGGCCCACCTGCTCTACGCTTCAGTGGACCAGGAAACCTGCAAGATAAAAGCTTTCttcatacttgttttttttttttttttcttgttgaacAGCTGCTGTGGATTTccttacattttacattcttcATTTTACGAAGGAAAACAATTTTGTATGCCCAAATCTTTCTTGAACTCCCTCCCCCCCCGTATGAGGACGTGAAAAGGAATCCAGTGGCAATCTCTCCAGTGAGCAGATTCTAGTTGTTGTTAGCAtccttctttaaaataaaatcacaaaagaaGCAGAACAACCCTGACTTTTTGGAGAAAGAACTTTCAAGCTTTTGTAAGATGGCGGTGCTGTTGTGAGAGCCTtgtggacaaaaacaaataaattaaaagaacacTGCTGTCTGCTCTTtttatctgatttttttttttggttttcccAAGTCTTGGAATATTTGGGCATGTACTCGGAGTTCAGATGTCGCACATTTCAGTTTAACTGAATAACTGACAGACTCCAGCTTTGGACCGGAAATGGCTGTGAGTGTTGACGGCCTGACTTTACTCTCGCAGAGCGACACAGTCCGTGGGTGGAGCTGTGTAATCCTTTACACATAATCTCAGCCCTCAGTGTGACTTCGTGAGCAGTTGTTGCCCAGTTTTACTATTTCAATTTGCTTAACCGTTTCCAgactgtaatataatatttttgtttgtttttagacaCAAGCTAATCTATAGAGCTGTAgattgcatttctttaaaaagaaaaaaaaaagaaaagaaaaaaataactgagaTACTGTAGGCAATTTCTGCAATATGCAACCATAAGTGATTTTGGCATTGATTGGCTGATCAGTATATAGATGTAGTCAGCTAAATgctttcttctgttttcattgtGGATTCTGCTGGAGGGAACAAGGTGACAAGTTAACACAAGCCAAATGAAGGACTTCTTTCATGTAGCAAAAGAACTGATCCTTTATTATAAGCTTGAATGTTTTGgtgcaacaaaaaaacatgcatatataatgtatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatggaaaCTTTTCTACCAAGAGATTATCTAAGCACTTGGTAATACCAGtactattacatttaatataaatatatatatgtatatatctatatctataatatagatatatagatatatctatatagattTAGATGGATATATTTACAAGAAACAGAACAACTATATCTCTCAGCTCCATATAAGTGCTTGAGGAGGTATAATATCTGTTTGCATGGTAGACTTTCTTGTAGTTGCTGCCAATACTCTTCTTGAGTTAACCTGCTATCGAACCGCAGTACAGGAACGGAGGAGTGCAGCCGTTGGGTGCGCTGTTGTGTTGTTCCTGATGCAGGTGTGACAAAGGGTGGAGGGTAGAGGACAGCTCAGTTGGACACTGGTACTTTGTTTTGATTCATGTTTAGTCATCCCACCATGCTGTTTAAACCCATTCTGACAGGCCCATATGCTCAGACAGTGTCTTTAGCTTCTCTGGAGTCAAGCGACCCCCTCTCGGTGTCATTACGGAGGTCTTGCGAGGAGTTCCCAAAACAACCAGCATGAATAACGTTTGAAAAACCTTTTAGGCGAATCCaagatttgtgttgttttttcttttccttttgcgTTGCTCATAAAGACATTAAGTTGCACAGATTAATAATCGTGGTGGGGTTTAGGTCCTTTGCAAAAGATCCTTCAGTCAAAGCGGGGCCAGGATGCTTGGGCTGGGAGAGCCAATGGGAGGGTTGTCAGAAGTGCCTTTTGCCCTTACACATTGACTGCCATCATTTGagattttcttgtttatttgagcGAAGAGAGCCATCGTTCTTTACCCACCCACAAACTAAAAGCAGTGCTAATCACATTTGTATCTTCCTCATGTTTGCTTTAGATGTTATGGTCTTctgcaatgtattttgaactaCAAGTGATTTGAAAACGGCATACACGGAATCAAGGGTGTAGGTTTAGATTTGACAGGAACAGAGGGGTGGCAGCAGTTTTGAAACCAGAATGTGTTATGAAATTAGAACCCTCTTTTTTTGTCATAGTATTATTTCTGGGCTGTTTAATTTGCTAAATCCTGCCGTGAGGAAATCCAACCACTTCTCATTGTCTACAGGATCCTTGTTGAGTCACCTTGACTGCCCACTTCACTTTTTTCAGGCTTTCCCTGCTCATTAAACAGGTGACACTTTGCACAAAGGAGGACTTTGAATTGTATCACTTTAGTTGCCaagaattgttttgaaaagcgACATTTCAAAAGGAATAAGACATTGAACAGAATGGAGAAATAAAGTACTTttagtattaattatttttatctcAATTTCTGTAAGGATCACACAGCTGTTCCTGTTCCTAAAACTGTTCCACAGGGATTTAAGCCTCTCTTTTAAATTGTGGGCAggatatatataaatgcaaaaataaataactacccCCTATGTCCAATTAAATAAAGGCCAGGAGAATTTGATTAATAAACTTGATGAGctcagtttaaatatatatatatataaataatttcattttatacagtgtcttgatttgtttttttcttccaccaATTATTGTATGAATCGCTTCATAAAGCAATCTGTATCGGTAGCAAACTGTATTGCCaaagaaactatttaaaaactgCTTGAATTATTTCAGGAAGGTAGCCATTcgtaggattttttttttttttttttttttttgcttcaacATTAGCCTTTGGACATACACCTACCAATTGTgaattataaaaacatgatgCAATCAAGGATTTGTTTTGCAGAGGCTTCTCAATTCTACCTAAGGAAGATCTGTTGGTGAATAGTTTTGATTGAATAGTTTGATTTTACAGTCACGAACTGGGATTACCGTGAACAATAACACAATCTTTACAGCAGCTCCTTCAGTTCTAGCTGACTTCTCTGGTAGTGTCGTTAATCTGAGCTGAGTTTACCAGCCCACCCAAGCCTGTTAGTTCTGGACAGGGCTGAGGGATTTAAAGAGGTTTTCAGATGGTGATCTTTTTCCTTCCAAATTCACACTGGAGGCTTGGGAGTGTGCGTCTgctcttgtattttgttttcgaTGGACTGAAGTTGTACTTAAACGTTCTTCgctgtatacaaaaataattggtttggtatgtttttttttgtttatttagattttttcccaACAAAGGACTGCGCATGGGCTAAACTTGCCAGGAAGGTGGTGTGGTAATCGGACACCAGAATACTGGGGAAAACCGTGGTCAATGCACCAAGCCATCTCAAGCTAAAGTGTTCAGTACCGACATGTTGTAAACTCAGTGGaagtatttgtctttttaattttgggCATAGAATCGGAACAAACTTTTGGAACAAACTGTGAAATTCTTAATGTTTTAGTTAAGAAACCAAGCTGGATAAAATCTAAAAGGAAAAAGGGGGCGGCCAGAGAGTTGGGGGGGATTTGTATCCCACAACTTCATACTCATTTTGCTTGGTTTAAAATGGGCACCAACGTCTTCAGTGGTAAACACAAATCCATTATTTCAGTTAAGGCATCAGCTTATGCAGTCCAGGACAGAGAGAAaagtggaaatgttttaaatctttacCCTAATTTACATACTTACatctacacacatacatgcatatatatgtagAGAGAGATGGATCAGTTTGAACAGCTTCGGAATGTGTTGATTTACCTTGAAAGTATTAACACACAAGacatacagaaatgtatattctaTATATGACAATTCTCCTTGGTACCTATAGTATAGTTACATGATTAAACTATTGTGTTCAGTGTCCACTTTATAGATTAGACTTGTGAATATTGTGAGACactgaacttaaaaaaataaaacttctaCAGATTCAGAAATAAAGGAGAAGCATTTGAAcaaatccttttattttattagaagtttaaatagttttattgtcATTTCCATCATCATTGtcaaatttaacacattttacgCATCCTTCTAAGGATGTTGAGAAGGCTATTATGCCCCTACATTTCACAAACGAATGTTAgtgtcaattaaatatttttacattggaAAGAAAGTAAGGTGTGCAAACTGTTATCCAGCACTCTACATATGTATTCAGTTGTCTGTGTCCAAGTATGTGCTTCAGTTTATCTTTGTCTTCCATCTCGGCCACTTTAGGAATCGGATCGCCAAATTACACTCTTTAAAGTTACGCTGATGCTGATATTTCTGTCCAATTTGTAGATGCTGAACGTTAACCAGACAAATGTAATCATAGTAGCCGTACAGATTTTCACGACAAAGCATCAAGTTGTGTacactttttcattattattattataataaatgaaaggGAGCAGCCAAAAGACATGAGGTTTTATCAAGCTAAGATCATGCTCCTTTGTCAATGACCCTGATTGTTAAAGCTGTCCCTCACTGCCTCGTTTTGATTGGCACAGGCCTAGTTTTGTATGGTTTGACGACGACTCATAATATAAGTTGATGggatttcttctttttttgtccTTATTGGAGCAGGAAAGCACCCAtcaaatgtttgtgtgtttatgcgTGCATGTGCGTGCCTGAGAGTGTGCACATTGGGGGTTGAGGGGTGGGGGAGGCATTTATATTGCCAATAGTTTAAATCTGCTGAATGCACTACAGAGACACGTTAATTGGGGTTAGTTTTGGGTGGGAGGGGAATTGGGGGGAAATTAGGTTTTATTTGAAAGATAGGGTTGTTTTCCTCCCACCCTACCGTTTCTGGTGACTAGGTACTGACTTCAAATAGAAGAGAAGGCTTAGAAACACTCCTGAtagtgaatgaaaacaaagcgGAAACAGACTCTTGCCTGTGAAACACTGAAGGCACCTGGAAGAGGAGAGGAAACAATCGAGGGACTTGACGTATTCTGAGTTCTGACTGGGGTCTCTTAATGGatttggcttttttttaaaagccgtgtatgttttcttgtttttctttttcattctttgtcGTTTATAACCTGACAGATTCTACGAAATAAGCTAGCTTGAACTTTActttttgtttagtgtttttttttttccatacttTTAGATACCTTTTGTTTATGATCTCTAATTAACCAAATAGAAATTTTAAGTGTTTGAAAATGAATCTGTCGGTCTGTTCATTAGAGTTTGTAGAAAGAATCTCTGGCTGTAGTTTGTGTTTccctcttatttttttaaacttgaagtttaaaaccatttggttttagttttttatttgtgaaacagTGCTCCCTTAAGATTAAAGAAGTACAGTGGGTAAAATAGTATACTACTTTTGAAATGGAgggcaaaagaaaacaaaacaaaaaaaactttccaaatCAGCCAAACAGTGACTACATCTGCTATGGATTTCCCAAGGAGCAAAAGGTCATGACTAATTGGGACTGTTTtgggatgcattttaaatgctatTACAGTATTACTTTCATAATATGGTGCTGATTTGAATATCCAGGTAATTAAAAGCAAGCTGGAGAACGTCttgagtgatttattttattttttcttattttctcttaaggttcaatttgaatatttaaatgtaaaatttggGAGTATCCATCCATTAAAGTGCATTGGGAAAGCCAGGCTCTTCCCCTgagttttacaaaaacaaaaatgaataatcatAAAGCCGTGCACTATGACCTTATGTTGTGTTGCTGTCACACAGCCAAAAATCTTGCCATAAACAGGCCTGTTGAGAACCATTTAACAACACCGGTATATTGCCTccagtgtattcaggattttgcACTAAAAGTTCATGTggacccttttttttttttttttctttccttttttaatctgATTGGTCTacttaatattaaacaaatggcAAGTTTCAGTATTCATCCATTTATTCGGATAACGGATGGCTGGCATCAAACAGTCACATGAAATCTAGCAATATTAAACTCCCTAGCAGTGTAATGAAGTGTAAGCCCTTggttatatctatatataatattttagatttattttagaaaaagcCTCTCTGAAGGAATGGTTATTTGGTTCCCAAGGTAACTTGACAGTCTCAAGTCGATCTTCAGTTTATGTAGCCCCTGACTGTGGCGATTCATTGATCAGTGCTTcagatatacatttgtttagtttaaagcACAGGTTAAATGGTTACACAATTTGCACACTGCTCCAAACCCCTgctttaaaacttttaaaccacaccacatttgtttttgcttttttcccccattttcatttgtttataagATCAAATGCAAGTGTCGTTGTTGTTTTACTGCAAATGTATGGTGATTTCTGTTGTACTATTGGTGATATTGTTTCTTAGTCTCTCAGGCTACATAGAAACTCTTCTTTTCCCCTTCTGAGATAATAGGTTGGTGGGAAGTACGTTGAGTAGTTTAGCGAAGATCTGAACTTCTATAAAGTGCAATTAAACACTAGAGGGAGCACTGTTGGAATCCAGTATGAACTTGATGGATATGTGCACAATCCTTATGTACTTatgctgatttttattttttattttacattttttgttctgtttatcaGTCTGTCAGTTAGACACAGGATTTCTACGGTGTATACGGCTCGCAGGAATGATGTGTTTTGATTCAGACTGGTGCTCTAAGTTTTGTATggtactttaaaaataaaaatggaaaatctgGTTCGGAGatgaggtttttattttggtggttTTTCAATTTTCTATTTCTGTGGGAGAAAAGTGAAGTGGGCATTTGGACCTTTTCTATTCCACACACTTTTGGtttcatgtaaatgtaaagttcAAGAAACGTGATGCATAATACACAAAGATATATCAAAGTTTACCAGTTTGCTTTACAGAGTggtataactattattatttaaactttcaCAACAACAAGGATTAAAAGAGAACTGGTAGTTcaactgagatttttttttttgtttaatctgttaCCCAATTTATTGaagttttaatgaaaaataacatggTGGCTCCCTCTAGCGGTACAAATCGAATAGTGCTT

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0005942 phosphatidylinositol 3-kinase complex cellular_component
GO:0035014 phosphatidylinositol 3-kinase regulator activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K02649 PIK3R1_2_3; phosphoinositide-3-kinase regulatory subunit alpha/beta/delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196640 lncRNA downstream 173560 15615562 ~ 15615787 (-) True G156113
TU196629 lncRNA downstream 204581 15581857 ~ 15584766 (-) True G156104
TU196599 lncRNA downstream 352481 15435124 ~ 15436866 (-) False G156088
TU196556 lncRNA downstream 357417 15427308 ~ 15431930 (-) True G156049
TU196553 lncRNA downstream 365497 15417978 ~ 15423850 (-) True G156048
TU196754 lncRNA upstream 128352 15947208 ~ 15947527 (-) True G156203
TU196762 lncRNA upstream 175931 15994787 ~ 16000039 (-) True G156207
TU196784 lncRNA upstream 243877 16062733 ~ 16063072 (-) True G156225
TU196787 lncRNA upstream 247813 16066669 ~ 16071528 (-) True G156228
TU196920 lncRNA upstream 832684 16651540 ~ 16671387 (-) True G156341
AMCG00006085 mRNA downstream 5346 15778207 ~ 15784001 (-) True AMCG00006085
AMCG00006075 mRNA downstream 12839 15773678 ~ 15776508 (-) True AMCG00006075
AMCG00006069 mRNA downstream 214660 15565462 ~ 15574687 (-) True AMCG00006069
AMCG00006067 mRNA downstream 229998 15544838 ~ 15559349 (-) True AMCG00006067
AMCG00006068 mRNA downstream 260023 15496753 ~ 15529324 (-) True AMCG00006068
AMCG00006087 mRNA upstream 22056 15840912 ~ 15877424 (-) True AMCG00006087
AMCG00006116 mRNA upstream 182697 16001553 ~ 16012344 (-) True AMCG00006116
AMCG00006114 mRNA upstream 205619 16024475 ~ 16031177 (-) True AMCG00006114
AMCG00006115 mRNA upstream 254507 16073363 ~ 16075726 (-) True AMCG00006115
AMCG00006108 mRNA upstream 336450 16155306 ~ 16180536 (-) True AMCG00006108
TU196604 other downstream 297705 15489402 ~ 15491642 (-) False G156088
TU196602 other downstream 352481 15433432 ~ 15436866 (-) True G156088
TU196327 other downstream 1005341 14782631 ~ 14784006 (-) False AMCG00006043
TU196273 other downstream 1106386 14679797 ~ 14682961 (-) True AMCG00006037
TU196220 other downstream 1279733 14509233 ~ 14509614 (-) True G155770
TU196760 other upstream 135220 15954076 ~ 15957090 (-) True G156206
TU196870 other upstream 635513 16454369 ~ 16462159 (-) False AMCG00006083
TU196884 other upstream 686737 16505593 ~ 16518111 (-) False AMCG00006118
TU196919 other upstream 850945 16669801 ~ 16671387 (-) False G156341
TU196984 other upstream 1129141 16947997 ~ 16950117 (-) False AMCG00006127

Expression Profile