RNA id: AMCG00006089


Basic Information

Item Value
RNA id AMCG00006089
length 3569
RNA type mRNA
GC content 0.45
exon number 15
gene id AMCG00006089
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 16123128 ~ 16145238 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGACATTATTTCCTGAAACGGTGTTCACTTCGCACACCGGCGTGTTGGGTTTGGGGTCAAACAATCAGAAAGAGGAACTTGTGCAGAGTGGAGAAAGAGGACCCGACACCATGACATTTAACAACTGATTCGGGATTGTGGATCTGTGCTGTGGATAATTACATTATAGCAAAGGGATGGAGGACAGGGAGGATTTCAAAGCCCTGAGGGCCAAGTTTCATGTCAAGGCCGAGATGTCCGACGCAGGAGGAAGCCCAAGATCCCAGAATCCGTCCCCTGTTGGAAAACTGGTCCAGTTGCCCTTTGCATTGCCCGTTAACGGGACTCCGAGACCTAGGATGTCCCCTGTCGTTCCAAAACTACAGCAAGGATTACGGCCTTTTCAAGAGGCCCCAAGATTTCCTAAGCCCCCCTTGGCCGAAGCGGAAGCCCCTGCTGGGGAGAGGCCTCCCCCGCTGCCTGGTGTGTTCCCCAGGGCCCCGCCTTTGAGCCGGGCTTTCCCCCCTGAACCGAAAAACCTGGGGGACTCGGACAGCGGCACGGTCACATCTAGAGCCGGGGAGCTACGGCACAACTTCATGTTGAAGCAGCAGAGGACCCAGGAGGGGCCCATGCAGCCCCCCAAACTTCCTGTCGCTCTCACCCCACCCCTCCGCAACCAGAAGAGCAGTACAGACTCGGCGGCCCCACTGAGAAGACCCATGCCCCCCGAAAGCACCCTGGGACCCCAGCCCATCAAGCCCAAACGTCCCCCTCTTGTCAATCTGGATCATTTCAGGAAAGCCAATCCTAACCTAAAGCTGCCTGGAAGACCTGCCTTTGGGAAACCTACTGcttgcAGCAACTTGCCCCTTCCTGCATTGTGTACCCCACCAGGGCCACCAAGACCACTGAAGCCCAACACTTTAGTTCACCAGCAGTCCATCGAATTCTCCAATCAAGGTGACGAGGACAGCGATGAAAGTGAAGTGTACGAAATTGTTGACAACAACGGGAGTCCACCTCCTGTACGCAGCGGTAATGACAAGAAGAGGCAGAAGGAACTCAAGAGACAGCAGGAGCTGCAGAGGAAAGCGCAGAAAGAGCGGCAGAAGAAAGACAATGAGTATCGGAAGAAATTCAAGTTGACCGGTGCCATAGACGTGCTCCACACGGCAAAGGTGAGACAGAACTGGCGAGGGGGGAAGAATGACCTGTGTGTCCGTCAGGGAGAGAGTGTGGAGATCATCCGAGTTAAAAACAACCCTGAGGGGATGTGGCTGGCGCATGGCTACATCAGCAACACGTGTGTGGATGTGGACTACGAGGAGGTGAAGCGTAAAATCCGCAACAAGGTGTTTGAGTCACCCAACCCCGCGTGTGATGAGGACTTCTATGATGACGTGGGCTCCTCTGACCAGATGAACAGCAGCAGGAATTCTGACAATGAAGATGTATATGATGATGTACAGCCCATATCAGATAGTttccctcctccacctcctgaAATCTGTCTGAACACAATGTCactgaaagaagaaaaggaactgaggaaaacatttaagATTGAGGGGCCCATTGAGGTTTTGTGTCAGATGATGGTGGACCCCGAAGCCAAAACCAAGAAGGGTGGAGGCAAGGACCTGCCCGTGATTCCAACGCAGATTGTGGACGTCATCAGGATGGGCGAGAAGAAGGTTCTCTGTCGCAATGAACATGGGAAATATGGTTACATTCCCCGAGCTGTTCTCATGAAAGCggAAATTGACTCTTTGTACCAGACTGATTTTGAAATCTATGATAATGACTGACCACTCCCCCTCAACATCACCCTCACCCAGGACTGATGCCCCAAAATATTGATGAGTTGAACCCGGGACTGTGGAAGTCTGTATGAGGAAAACAGTTCCCCTTTGACAGCACAGTGACATTGGAGTAATCAGAAAGGACTGGGGAGGAGAGAACATTGTGTTTGGGTGCTTGTCAATACCTGAGAAATATTGAAGGAGAGACCCTACCTTTCTTTTGAACCATTTGGGGGAAGTCAGAACAACCTGTACAGTAGACTTTGCATAGAAAAAAAGCTATGACTTCTAAAAGACTATGGGACCAGCGATTATTGCAAAccgaacaacaacaacaatcaattTCACTGACAATTTTTGTGCATTCATGTGCCCCGCTGTAAATAACGtctgtggttttattatttttaatcacactAGTAAAGGgctatatttacacttgttttcTGGGGAGGAACTGCAGTCTTTCTGAcactgcaatgttttatttagatgtttgGTAAATGTTTTTACTTAGATTTATAACGAAGATTggcattttttccacagctaGAATTAGAAGTACAGTCCGATGCAGTCTTTGAAGAACGGTATATTTTGTGTTGCAGTGTCTGTTTTTGATGGGAAAGCATGCTTCATTTGGCCGCTGGGCTAGATGCCTTGTATGGTACTGTCTTTGCTCGATTTTTTAGTACTGTGCCACCTAGTGCTCTTCAAATACATGCACTAAAGTACAGAAACAAACcatgctgtttttaaaattgtttcatttattaCTGCAGTAATAAACACAAGAGATGTGGTTGGATAAGTTAGTGTTTAAGTGAGCCTTTTACCAGGTGCTTACGAATATAAGCCTCTTCTCttccattaaatgttttttgccTTCTTATCCATGTGTTCTGTCCTTCGAATAAGATATAAAACCAAAATCCTGCTGTAAGTCACTGGAAATTCACCGGGTCATGCAAAGTTCATCGGCCTGAAATCATAATAGAAATGTGTTGGTTTCAGTGTATCTGTTTAGGACAGACAAATTAACAACGGGGAGTGCCtatgtagatttattttatttatttattattatttgtcttggaacaaaaacttttttcccatAATACTAATAGATGCCATTAAAGTTCTGAATGTAGTTACCAATGTCTTCTGGCTGTGCTTTGTGCAACGGTtggtatttgttgttttgaaagctttttgtGTAACTGATCACCCTTTAAAAGTCACCCACATTACAAATTCGAGGAATTCATGTTTTATCATGATTGttaacacaaaaaactaaaaaaaaaaagcacttcaCCATTAATCACCTGCCGTTCCTGAACGCCGCCACAAGGTGGAGACATTGGGGtgtgaaaggaaaataactGATCGTAGTTTTCcctttcatgtttttgattttaattgaacagTAGGAATCTATTGTCAACTTAATATTAAAGGGAGACTTAACAACAGATGTGTATAAGTTTGCTTCAGACTATCTTattcaaaataagtatttcttaaaattaaattacttgtATTTCGTCGGGCGAAATAGGATACGTGTTTGAGTGTCTTTTACGTGacttctgtaaataaatatcaaatttgaaaggaaacgaaTGAATTAACAGCCTGTCATTTACAATATTTGAGATCATGGCCTACTTGTTTTTTCGTTTATCATTTAATTCTATTAAAATAGAGTGGGGGAGGGGaaggaaaattattaaatagaaaaagggtagaaagaaaaggagaggatTGCTTCTGAATTCCAg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196744 lncRNA upstream 87159 16032961 ~ 16035969 (+) False AMCG00006111
TU196694 lncRNA upstream 289834 15833079 ~ 15833294 (+) True G156155
TU196665 lncRNA upstream 311017 15778199 ~ 15812111 (+) True G156130
TU196592 lncRNA upstream 517249 15561603 ~ 15605879 (+) True G156082
TU196547 lncRNA upstream 691189 15430476 ~ 15431939 (+) True G156042
TU196847 lncRNA downstream 318770 16464008 ~ 16467676 (+) True G156279
TU196875 lncRNA downstream 359532 16504770 ~ 16505206 (+) True G156302
TU196896 lncRNA downstream 454294 16599532 ~ 16599858 (+) True G156321
TU196901 lncRNA downstream 480320 16625558 ~ 16627713 (+) True G156326
TU196904 lncRNA downstream 499209 16644447 ~ 16644849 (+) True G156329
AMCG00006088 mRNA upstream 2225 16104381 ~ 16120903 (+) True AMCG00006088
AMCG00006113 mRNA upstream 56230 16054075 ~ 16066898 (+) True AMCG00006113
AMCG00006112 mRNA upstream 73304 16047776 ~ 16049824 (+) True AMCG00006112
AMCG00006111 mRNA upstream 87170 16032892 ~ 16035958 (+) True AMCG00006111
AMCG00006107 mRNA upstream 134353 15964450 ~ 15988775 (+) True AMCG00006107
AMCG00006141 mRNA downstream 529548 16674786 ~ 16680552 (+) True AMCG00006141
AMCG00006148 mRNA downstream 546343 16691581 ~ 16696873 (+) True AMCG00006148
AMCG00006142 mRNA downstream 562370 16707608 ~ 16722360 (+) True AMCG00006142
AMCG00006143 mRNA downstream 578054 16723292 ~ 16731231 (+) True AMCG00006143
AMCG00006125 mRNA downstream 763278 16908516 ~ 16917980 (+) True AMCG00006125
TU196781 other upstream 63298 16054035 ~ 16059830 (+) False AMCG00006113
TU196746 other upstream 150122 15964433 ~ 15973006 (+) False AMCG00006107
TU196591 other upstream 538367 15578084 ~ 15584761 (+) True AMCG00006065
TU196404 other upstream 1015394 15107209 ~ 15107734 (+) True G155932
TU196402 other upstream 1017561 15103456 ~ 15105567 (+) True AMCG00006092
TU196902 other downstream 482555 16627793 ~ 16629182 (+) True G156327
TU197026 other downstream 977967 17123205 ~ 17127554 (+) False AMCG00006149
TU197282 other downstream 1828503 17973741 ~ 17980637 (+) False G156640
TU197332 other downstream 2044986 18190224 ~ 18356589 (+) True AMCG00006138
TU197362 other downstream 2332890 18478128 ~ 18480087 (+) True AMCG00006174

Expression Profile