RNA id: TU196796


Basic Information

Item Value
RNA id TU196796
length 1491
RNA type TUCP
GC content 0.40
exon number 5
gene id AMCG00006089
representative False

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 16123128 ~ 16145238 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAATAACGAATGTGTCCCCTTTGTTTCAGTCTGAACACAATGTCactgaaagaagaaaaggaactgaggaaaacatttaagATTGAGGGGCCCATTGAGGTTTTGTGTCAGATGATGGTGGACCCCGAAGCCAAAACCAAGAAGGGTGGAGGCAAGGACCTGCCCGTGATTCCAACGCAGATTGTGGACGTCATCAGGATGGGCGAGAAGAAGGTTCTCTGTCGCAATGAACATGGGAAATATGGTTACATTCCCCGAGCTGTTCTCATGAAAGCggAAATTGACTCTTTGTACCAGACTGATTTTGAAATCTATGATAATGACTGACCACTCCCCCTCAACATCACCCTCACCCAGGACTGATGCCCCAAAATATTGATGAGTTGAACCCGGGACTGTGGAAGTCTGTATGAGGAAAACAGTTCCCCTTTGACAGCACAGTGACATTGGAGTAATCAGAAAGGACTGGGGAGGAGAGAACATTGTGTTTGGGTGCTTGTCAATACCTGAGAAATATTGAAGGAGAGACCCTACCTTTCTTTTGAACCATTTGGGGGAAGTCAGAACAACCTGTACAGTAGACTTTGCATAGAAAAAAAGCTATGACTTCTAAAAGACTATGGGACCAGCGATTATTGCAAAccgaacaacaacaacaatcaattTCACTGACAATTTTTGTGCATTCATGTGCCCCGCTGTAAATAACGtctgtggttttattatttttaatcacactAGTAAAGGgctatatttacacttgttttcTGGGGAGGAACTGCAGTCTTTCTGAcactgcaatgttttatttagatgtttgGTAAATGTTTTTACTTAGATTTATAACGAAGATTggcattttttccacagctaGAATTAGAAGTACAGTCCGATGCAGTCTTTGAAGAACGGTATATTTTGTGTTGCAGTGTCTGTTTTTGATGGGAAAGCATGCTTCATTTGGCCGCTGGGCTAGATGCCTTGTATGGTACTGTCTTTGCTCGATTTTTTAGTACTGTGCCACCTAGTGCTCTTCAAATACATGCACTAAAGTACAGAAACAAACcatgctgtttttaaaattgtttcatttattaCTGCAGTAATAAACACAAGAGATGTGGTTGGATAAGTTAGTGTTTAAGTGAGCCTTTTACCAGGTGCTTACGAATATAAGCCTCTTCTCttccattaaatgttttttgccTTCTTATCCATGTGTTCTGTCCTTCGAATAAGATATAAAACCAAAATCCTGCTGTAAGTCACTGGAAATTCACCGGGTCATGCAAAGTTCATCGGCCTGAAATCATAATAGAAATGTGTTGGTTTCAGTGTATCTGTTTAGGACAGACAAATTAACAACGGGGAGTGCCtatgtagatttattttatttatttattattatttgtcttggaacaaaaacttttttcccatAATACTAATAGATGCCATTAAAGTTCTGAATGTAGTTACCAATGTCTTCTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196744 lncRNA upstream 104575 16032961 ~ 16035969 (+) False AMCG00006111
TU196694 lncRNA upstream 307250 15833079 ~ 15833294 (+) True G156155
TU196665 lncRNA upstream 328433 15778199 ~ 15812111 (+) True G156130
TU196592 lncRNA upstream 534665 15561603 ~ 15605879 (+) True G156082
TU196547 lncRNA upstream 708605 15430476 ~ 15431939 (+) True G156042
TU196847 lncRNA downstream 319385 16464008 ~ 16467676 (+) True G156279
TU196875 lncRNA downstream 360147 16504770 ~ 16505206 (+) True G156302
TU196896 lncRNA downstream 454909 16599532 ~ 16599858 (+) True G156321
TU196901 lncRNA downstream 480935 16625558 ~ 16627713 (+) True G156326
TU196904 lncRNA downstream 499824 16644447 ~ 16644849 (+) True G156329
AMCG00006088 mRNA upstream 19641 16104381 ~ 16120903 (+) True AMCG00006088
AMCG00006113 mRNA upstream 73646 16054075 ~ 16066898 (+) True AMCG00006113
AMCG00006112 mRNA upstream 90720 16047776 ~ 16049824 (+) True AMCG00006112
AMCG00006111 mRNA upstream 104586 16032892 ~ 16035958 (+) True AMCG00006111
AMCG00006107 mRNA upstream 151769 15964450 ~ 15988775 (+) True AMCG00006107
AMCG00006141 mRNA downstream 530163 16674786 ~ 16680552 (+) True AMCG00006141
AMCG00006148 mRNA downstream 546958 16691581 ~ 16696873 (+) True AMCG00006148
AMCG00006142 mRNA downstream 562985 16707608 ~ 16722360 (+) True AMCG00006142
AMCG00006143 mRNA downstream 578669 16723292 ~ 16731231 (+) True AMCG00006143
AMCG00006125 mRNA downstream 763893 16908516 ~ 16917980 (+) True AMCG00006125
TU196781 other upstream 80714 16054035 ~ 16059830 (+) False AMCG00006113
TU196746 other upstream 167538 15964433 ~ 15973006 (+) False AMCG00006107
TU196591 other upstream 555783 15578084 ~ 15584761 (+) True AMCG00006065
TU196404 other upstream 1032810 15107209 ~ 15107734 (+) True G155932
TU196402 other upstream 1034977 15103456 ~ 15105567 (+) True AMCG00006092
TU196902 other downstream 483170 16627793 ~ 16629182 (+) True G156327
TU197026 other downstream 978582 17123205 ~ 17127554 (+) False AMCG00006149
TU197282 other downstream 1829118 17973741 ~ 17980637 (+) False G156640
TU197332 other downstream 2045601 18190224 ~ 18356589 (+) True AMCG00006138
TU197362 other downstream 2333505 18478128 ~ 18480087 (+) True AMCG00006174

Expression Profile