RNA id: AMCG00006090


Basic Information

Item Value
RNA id AMCG00006090
length 2075
RNA type mRNA
GC content 0.46
exon number 5
gene id AMCG00006090
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15181964 ~ 15185213 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTCCTGGTTGATAGTGTAGTGGGGTAAATGTGAGGCCGAAGTCCAAAGACAAATTTTGAGTTCTGCTGGCAAAGTTATGCAACATTGACTCTGTTTCATAAATTATTGTACGTTattattgtacaaaaaaaagcGTTACGGCATGATCTCGCTTCTTTGTAACTGATTTTTTTACGTATTTATTGTCTTTGCCAAGCTGGTAAAGTAGGCAAAATAAACATGCCAGGTTCAGTGGAAGCATTGGTAAACGTGCTGGAGTCGTACAGAGGGCGAGACAAGCTGGTGAGGACGCTGTGCTATGGCTCCCAATTGGTCGGTGGGGTCATTTCCCAGAAGGCAAGAGGGCAGTCGAGTCTGGGGAAGAGTCTGCTGCTGTTTTCGGCCCAGCTCAGCCACTGCCGCACCGTTCTCAGACTGTTCGACGACCTCTCGATGTTTGCTTACTCGAGGAGCATCGGGCTCGGAGCCGCGGAGGAAGACCCTGGATTGCGCTGGATGTCTGTGCTCAACAACCTGGCTGACCAGCTCTACTACCCCTGTGAGCACATAGCCTGGGCAGCAGACGCTAAGATCATCCGGGCCAAGTCTGACAAATGGTGGACGCTGAGCACAGCATTATGGGGGATTTCCCTACTGTTGGGGATTCTCAGGTCTCTCCGAATTCTCTTGTTACTGAGGaggaaactgaagaaaaacgAGAGAAGCCGACAGCGGGAGTCCAGCGAGCCAGGGGTCCAGGCCGGCTTGGAGCTCAGACAGATACGCAGTGAAGTGCTTAGTGTGGCCAGTAGCATGGCGGATCTGGCCAATGCAATCCACTGGATGCCCCCTGGATTCCTGTGGGCTGGACGCTTCCCTGATTGGTTGGTGGGACTCCTGGGAACGACCTCTTCGCTGATTGGCTTGCATCAGATGTGCaccggaggaggagggggtggtgtCTGAGAGGCGTGGTTTCTGTTCGGAGCAGCCAGCGGATTGGAGCACAGCGCTGTCCATCAACGACGGGAAATTGCAGCGCAACCTAATGACTAATGATAGAAAGTGCTACAGTTGTTTTCCTGTGACTTTAGAGGGTTCCCCATTCCTGCCGAAGCAATACAGCACAAGATTATCTATGACACACATCTTAATTTGACTGTTTCTCAGGAATAGACTTGAATCTTGTTCAATGGGATAGTGAGTAAGACTAGTTTGGAATGCACTCTCCACttttaagtttgtttaaaatcCTTCTAAGAAGAGCATACAGACATTACACATTCTTGTTCAGTTTTACACCATGCATTTGGAGACGTAGTTTACCATTGTGTAGTTCAGCTGCACTTCATTCCAGAAATTGGAAATGAATTTAAagccacacatacacattttgtCAACCATTCCTATAACGGAATCATCAGCGGATTCTCGACTATTTACCCAAGGACCTCAGTTCTTTACTGCGGAACGGCGCCCATTGAAGAAGATGGACTGACTGTCAGGCCCGGTGGCAGGCAGCATTTTGGGAACAAGCTGAACCAGAGGTCCTCATCTTTCTGGTCACATCTAGGGTTTCCTCAAAAGCATAACTCGGGGCATGTTTTGTTGCTCTTGTGCTCTTGTGCTCTGATGTTCACTGGTGATGTGAAGCTCTTGTGCCAACTGAAGTTTCAATTGACCAAGGTGCTGTTCCCAATATCCACCTCTAGAGGGAGTGTATGTATCATAAACTGTGTGGTATTTTACAGACCTGTAAGATCTGAAACTGCACATTACTTACATATATATGACTTAAAACCTCTCCAAGACCAAGCCTTAAGACTACTACAGCTCTCGGAGTAGGACTAATAGGAAGTAGgcagattcatatttttaaaatcaattgtaGATCTAGTAAAttgaaaaaaagtaattgttttatcTTCCACCATGAATCACttgtttatttcacagtttACTATTAATTTGCTTATTCAAATTAGTGTTCATTTACCTTCGATCCAGGGTAACCTATACTCACTGTTAAGATTTGTCATGGCAATGCAAAAGTCTGAAAAGTGAAagatggaataaaaacaaacatatgtaCTAA

Function

GO:

id name namespace
GO:0016559 peroxisome fission biological_process
GO:0005779 integral component of peroxisomal membrane cellular_component

KEGG:

id description
K13353 PEX11C; peroxin-11C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196406 lncRNA upstream 70789 15109593 ~ 15111175 (+) True G155934
TU196405 lncRNA upstream 72768 15107994 ~ 15109196 (+) True G155933
TU196403 lncRNA upstream 75561 15105595 ~ 15106403 (+) True G155931
TU196399 lncRNA upstream 78585 15100320 ~ 15103379 (+) True G155929
TU196456 lncRNA downstream 661 15185874 ~ 15187225 (+) True G155974
TU196547 lncRNA downstream 245263 15430476 ~ 15431939 (+) True G156042
TU196592 lncRNA downstream 376390 15561603 ~ 15605879 (+) True G156082
TU196665 lncRNA downstream 592986 15778199 ~ 15812111 (+) True G156130
TU196694 lncRNA downstream 647866 15833079 ~ 15833294 (+) True G156155
AMCG00006091 mRNA upstream 25459 15148938 ~ 15156505 (+) True AMCG00006091
AMCG00006092 mRNA upstream 76475 15103543 ~ 15105489 (+) False AMCG00006092
AMCG00006093 mRNA upstream 85127 15092017 ~ 15096837 (+) True AMCG00006093
AMCG00006030 mRNA upstream 140037 15018786 ~ 15041927 (+) True AMCG00006030
AMCG00006031 mRNA upstream 190606 14990894 ~ 14991358 (+) True AMCG00006031
AMCG00006070 mRNA downstream 3011 15188224 ~ 15196741 (+) True AMCG00006070
AMCG00006071 mRNA downstream 19641 15204854 ~ 15215919 (+) True AMCG00006071
AMCG00006072 mRNA downstream 44752 15229965 ~ 15271081 (+) True AMCG00006072
AMCG00006048 mRNA downstream 105443 15290656 ~ 15298380 (+) True AMCG00006048
AMCG00006051 mRNA downstream 116551 15301764 ~ 15306184 (+) True AMCG00006051
TU196404 other upstream 74230 15107209 ~ 15107734 (+) True G155932
TU196402 other upstream 76397 15103456 ~ 15105567 (+) True AMCG00006092
TU196155 other upstream 798384 14375995 ~ 14383580 (+) True AMCG00006009
TU196053 other upstream 1072094 14108173 ~ 14109870 (+) True G155638
TU196052 other upstream 1083268 14097804 ~ 14098696 (+) True G155637
TU196591 other downstream 392871 15578084 ~ 15584761 (+) True AMCG00006065
TU196746 other downstream 779220 15964433 ~ 15973006 (+) False AMCG00006107
TU196781 other downstream 868822 16054035 ~ 16059830 (+) False AMCG00006113
TU196796 other downstream 955331 16140544 ~ 16144623 (+) False AMCG00006089
TU196902 other downstream 1442580 16627793 ~ 16629182 (+) True G156327

Expression Profile