RNA id: AMCG00006091


Basic Information

Item Value
RNA id AMCG00006091
length 1365
RNA type mRNA
GC content 0.58
exon number 7
gene id AMCG00006091
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15148938 ~ 15156505 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGACCACACTGGCAATTCTTGCGCTTTTCATAGCCACCCTGCTGGAGGTTAGCACGGGCTTCCCCGGGTTCGACAGGAAGGGGGCTGCAGGGAAGGAGAAGAAGGTCCAGTTCGCCTCCTGGGATGACGTGAACGTGATTGCCCATGGACTGCTGCAGCTGGGCCACGGTCTCAAGGAGCATGTGGACAAAACTAAAGGCCAGCTCAGGGACATCTCGGTCAAGCTCAAGACCTTCAACGGCACGGTGACCGAGCTGAGCCGCCAGACCCAGAGGCTGCAGGAGGACGGGGAGGCACTGAAGGCGAAAGCTCAGGGGCTGGAGGATAGAGAGAGCCTGGTGCTCAGCGTCTCGACCGAGCTGAGGCAGAAGGCGGAGGAGATGCAGAGGGAGGGGCAGACCGTCCAGGACAGGGTGAGCAAGCTGGAAGAGAAGGTGGACGGACTCCTGGAAGGTCAGGGGCAAGAGGGCAACTGGATGCTGGAGGCACAGAATCGGCGCATCGATGACCTGGTGGAAAGGATCAGACAGCAGCAAGACAAACTGGACAAGCAGAACATCCGCATCAAGACTCTTCAGAGCCAGATCCACCAGAGCAGAGCTGCCAGTCCAAAAATTAGAGCTTTCCTGGGACGCAAATTGGAAGAAGTGGCCCTCAATGGCAGCACCGAACAAGCCGATGCGCCTAATGACATGGCTCCAGACTGCCACGTTCTGTTCCTGAGAGGCGAGAGAACCAGCGGAGTCTACACCATTCAGCCTCACAACACCGAAGCTTTTGAAGTCTACTGCCAAATGACGTCTGAAGGCGGGTGGACGGTCCTTCAAAGGCGCCTGGATGGCTCGGTGGATTTCGATCAGCTCTGGCAGGCGTACAAGACTGGCTTCGGCAGCCTGGATGGCGAGTTCTGGCTGGGCCTGGAGAAGATTCACATGCTGTCCCAACAAGGGAACTATATGCTGCAGGTGGAGCTGACAGACTGGAGTGACCAGACCAAGTCCATCCAATACCCGTTCCATCTCAGCGGAGAGGATGCCAGCTATGCTATGCACCTCCACGGGAGTTCCCCGAGCAACCAGGACAGCGCGATGAGCACAGAGCCCACTGGTCTTCCTTTCTCCACCCGAGACCGGGACCACGACCACAAGCCGGACATGAACTGCGCCAAGCAACTCACTGGCGGCTGGTGGTTCAGCAACTGCGGACGCGCCAACTTGAATGGCAAATACTTCAGCAGCGTACCACGCGACAGACACGCGCGGAAACAGGGTGTGTTCTGGAAGACCTGGAGGGGGCGCTACTACCCGCTGAAGACCACCGTCATGATGATGGCTCCTGCCAAGGTTGAGTACGACTCGTAA

Function

GO:

id name namespace
GO:0009617 response to bacterium biological_process

KEGG:

id description
K08767 ANGPTL4, PGAR; angiopoietin-like 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196406 lncRNA upstream 37763 15109593 ~ 15111175 (+) True G155934
TU196405 lncRNA upstream 39742 15107994 ~ 15109196 (+) True G155933
TU196403 lncRNA upstream 42535 15105595 ~ 15106403 (+) True G155931
TU196399 lncRNA upstream 45559 15100320 ~ 15103379 (+) True G155929
TU196400 lncRNA upstream 45559 15100320 ~ 15103379 (+) False G155929
TU196456 lncRNA downstream 29369 15185874 ~ 15187225 (+) True G155974
TU196547 lncRNA downstream 273971 15430476 ~ 15431939 (+) True G156042
TU196592 lncRNA downstream 405098 15561603 ~ 15605879 (+) True G156082
TU196665 lncRNA downstream 621694 15778199 ~ 15812111 (+) True G156130
TU196694 lncRNA downstream 676574 15833079 ~ 15833294 (+) True G156155
AMCG00006092 mRNA upstream 43449 15103543 ~ 15105489 (+) False AMCG00006092
AMCG00006093 mRNA upstream 52101 15092017 ~ 15096837 (+) True AMCG00006093
AMCG00006030 mRNA upstream 107011 15018786 ~ 15041927 (+) True AMCG00006030
AMCG00006031 mRNA upstream 157580 14990894 ~ 14991358 (+) True AMCG00006031
AMCG00006040 mRNA upstream 300800 14838689 ~ 14848138 (+) True AMCG00006040
AMCG00006090 mRNA downstream 25459 15181964 ~ 15185213 (+) True AMCG00006090
AMCG00006070 mRNA downstream 31719 15188224 ~ 15196741 (+) True AMCG00006070
AMCG00006071 mRNA downstream 48349 15204854 ~ 15215919 (+) True AMCG00006071
AMCG00006072 mRNA downstream 73460 15229965 ~ 15271081 (+) True AMCG00006072
AMCG00006048 mRNA downstream 134151 15290656 ~ 15298380 (+) True AMCG00006048
TU196404 other upstream 41204 15107209 ~ 15107734 (+) True G155932
TU196402 other upstream 43371 15103456 ~ 15105567 (+) True AMCG00006092
TU196155 other upstream 765358 14375995 ~ 14383580 (+) True AMCG00006009
TU196053 other upstream 1039068 14108173 ~ 14109870 (+) True G155638
TU196052 other upstream 1050242 14097804 ~ 14098696 (+) True G155637
TU196591 other downstream 421579 15578084 ~ 15584761 (+) True AMCG00006065
TU196746 other downstream 807928 15964433 ~ 15973006 (+) False AMCG00006107
TU196781 other downstream 897530 16054035 ~ 16059830 (+) False AMCG00006113
TU196796 other downstream 984039 16140544 ~ 16144623 (+) False AMCG00006089
TU196902 other downstream 1471288 16627793 ~ 16629182 (+) True G156327

Expression Profile