RNA id: TU196402



Basic Information


Item Value
RNA id TU196402
length 550
RNA type TUCP
GC content 0.47
exon number 4
gene id AMCG00006092
representative True

Chromosome Information


Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15103456 ~ 15105567 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCCTGTGGAAGTATTTCCCGCAtataacacacaataaaataattaaaaataaaaaagaccgCGTTAGATTTTGAGTATAAAAACAGCCCGCAGCCCCACGTgaccctctctctgtctcaagCCGCCATCATGGACGCGAGTCGTGTGCAGCCCATCAAGCTCGCAAGAGTCACCAAGGTTCTTGGAAGGACCGGTTCCCAGGGACAGTGTACGCAGGTGCGTGTCGAGTTCATGGACGACAGCAACCGATCCATCATCCGCAACGTGAAGGGCCCAGTCAGAGAGGGCGATGTGCTCACCCTGCTGGAGTCCGAAAGAGAAGCAAGGAGGCTGCGCTAGGAGTCCCTTGTGAAGATGGAAGACACGCCCACATTGAAGACCACTGTTGTGGAGTATGGACACTGATTTTTGTAAAGCAGTGTTAAAAGCACGATGTGTACAGTTTGACAATAAAGGTTGGATTGGCAATTAATtgtcattgtttatttctgaatatgtatttgGATTTCCATGAAGCTTTATATATGTTCAGTCAATTATAGAGAGGGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU196399 lncRNA upstream 77 15100320 ~ 15103379 (+) True G155929
TU196400 lncRNA upstream 77 15100320 ~ 15103379 (+) False G155929
TU196383 lncRNA upstream 47499 15050855 ~ 15055957 (+) True G155913
TU196365 lncRNA upstream 121836 14981101 ~ 14981620 (+) True G155898
TU196363 lncRNA upstream 122966 14979305 ~ 14980490 (+) True G155897
TU196403 lncRNA downstream 28 15105595 ~ 15106403 (+) True G155931
TU196405 lncRNA downstream 2427 15107994 ~ 15109196 (+) True G155933
TU196406 lncRNA downstream 4026 15109593 ~ 15111175 (+) True G155934
TU196456 lncRNA downstream 80307 15185874 ~ 15187225 (+) True G155974
TU196547 lncRNA downstream 324909 15430476 ~ 15431939 (+) True G156042
AMCG00006093 mRNA upstream 6619 15092017 ~ 15096837 (+) True AMCG00006093
AMCG00006030 mRNA upstream 61529 15018786 ~ 15041927 (+) True AMCG00006030
AMCG00006031 mRNA upstream 112098 14990894 ~ 14991358 (+) True AMCG00006031
AMCG00006040 mRNA upstream 255318 14838689 ~ 14848138 (+) True AMCG00006040
AMCG00006041 mRNA upstream 275929 14819668 ~ 14827527 (+) True AMCG00006041
AMCG00006091 mRNA downstream 43371 15148938 ~ 15156505 (+) True AMCG00006091
AMCG00006090 mRNA downstream 76397 15181964 ~ 15185213 (+) True AMCG00006090
AMCG00006070 mRNA downstream 82657 15188224 ~ 15196741 (+) True AMCG00006070
AMCG00006071 mRNA downstream 99287 15204854 ~ 15215919 (+) True AMCG00006071
AMCG00006072 mRNA downstream 124398 15229965 ~ 15271081 (+) True AMCG00006072
TU196155 other upstream 719876 14375995 ~ 14383580 (+) True AMCG00006009
TU196053 other upstream 993586 14108173 ~ 14109870 (+) True G155638
TU196052 other upstream 1004760 14097804 ~ 14098696 (+) True G155637
TU195694 other upstream 2070048 13025764 ~ 13033408 (+) False AMCG00005964
TU195534 other upstream 2389443 12711778 ~ 12714013 (+) False AMCG00005984
TU196404 other downstream 1642 15107209 ~ 15107734 (+) True G155932
TU196591 other downstream 472517 15578084 ~ 15584761 (+) True AMCG00006065
TU196746 other downstream 858866 15964433 ~ 15973006 (+) False AMCG00006107
TU196781 other downstream 948468 16054035 ~ 16059830 (+) False AMCG00006113
TU196796 other downstream 1034977 16140544 ~ 16144623 (+) False AMCG00006089

Expression Profile