RNA id: AMCG00006094


Basic Information

Item Value
RNA id AMCG00006094
length 2866
RNA type mRNA
GC content 0.39
exon number 4
gene id AMCG00006094
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15098331 ~ 15103532 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACTCAAAATCTAACGcggtcttttttatttttaattattttattgtgtgttataTGCGGGAAATACTTCCACAGGCAACGGTTCTGCCCAAATATcagcaatatattaaataactgtgtagtgtgtgtgtctaatccCATCGTGCATTGCATCCACTTCCGCATCCCTGTGGGAaagactttaatttaaattaaattataacttTTCGGGTTAAGATAATTAAGAATTGGTGATCACATACATTGTGTAAGCAGAAGTCTGAAGAGAAAacgttaaataaaataaataaataaaagtgccAGGTTTTCTCATGGTACCCGGAGGGTCTGCCCTTGACAACAACAATGGCGTCCGCAACCAAGATTATACGAAGAATTAGGAACTTCTTTTCGGGGCACGATCTCCAAGCTAAGCTTCAACTTCGTTACACTGAGATCGCTAAAAGGACTCAGCCCCCACCTAATCTCCCAGTAGGGCCCAGCCACaagtttgcttttaattattactgCCTACGAGATGGGCGACGGGAAGCGGCCCCTCCAACGATTGTGATGTCGTCCCAGAAAGCACTGGCACCTGGCAGTGAAGTTCCAGCTGTACCTGCCAAGCTTCCAGTGGTGCCCGGACCTCCAGCGAGGGACCTGCAGCTGTCTACAGACCAGCCATACctctgagagagagggtgaggggggGTGTAATAGTCCTGCTGGTTTATGACAGTAAACCACTGCCGTTCACATCTCCACCTGCACTAGGTGCTCACTGctgctgtaattaaaaagaGCCACAGCCTAAACTTTAGGGCCCAGTCCCTTGTCTGTATTGTTCTGtataaagtaaaacatgaatccagtaaattaataaaaagtattatatatGTCATGGAATATgtggttatttttaaatctctgtcTTTTAGTAATTGAAAATCAGTATTTTCTTCAGTGGTGATTTGATTATTGtacagcagtggttcccaataCTGCTTCTGGAGGACCCCCgaccctgctgttttttcttccaaccaagctcttaattacttgTTGTATGTGTAATGTCTCATTTAACTATATTGTAAGTATATTATAcagtttggtgtgtgtgtgtgtgtgtgtattgctgCGAATCCTAACACATGTGCTATTTTATTACATGCAAGTATCAGACTAAATTTAGACTGATGAAAAATGGCTAAAAGAAGCACCTGTGTTTCAGTTCTGCACACCCCCATAAAACCCTCCAACTGGGTTTTATTGCAGTGAGCACCGGGGCTGGAGGAGAAGTTTGTCTGGGAGTGGTGAACTAGGAGgattgtttaaaataagaaatcattGATCTTCCAGGACCTGTCTGTTGCTACAGACTGTCCCTTAAACACAATTCAAAAGAGTGAATGATTGTATTACCACAACAGTATAGAATCGGggatttaaaaatttaaaaaggcatgaaaaaaatgtttcagaagaACTAATACATCAAAAGAAATTGCTGGTGTGTTCAACACttgcatacaaaaacaaacaaaaaatgtttgtgcagTTTCACATGTTCTCCACATGGTGTCATGCTTAAATCACCCTAAAAAGAGGTCTTGTAAAATCTGTGCACAAAGCAATGGTTTATATATGTTCTGTATGAAATGCTTGTAAAGAtaattttgcattacatttagaaaaacaaatatatttgaaacattGCTCATGTGCAGATCTGtattacacatattttacagatccaaattataattatacagagACAAAACCTGTTTTATACTGAACACATCACCGGTTTATGTATTAGCTTGCTTATTCCATTCCTCGTAACTGGTTCAAATCCACTCGATGTGTTTGTCGACTTCAGGTTTAAAGTATAAAGCTGACTTTGTGGAAGTTATTTCTGAGATCACGAAACAACCTTGTAGAGAATTTACCGGTACAATAATGACAAAGAACTGGAGCTGTGAAGGGGAGTCTTCTGTTGAAACCAGGCTTTTTCAGACAACAgccttttttggttgttgttctgAACTCCCCCACCGAAGACAAAAACTGAACTATGTTGGAGGCTAAATGTGTGAAGGGAAGAACATTGTTCTGGACTGTGCTGGAAGAGCTCACAGCACTCACACTATGATTCGTACATGGTCAGATTCACACAACCAGTGTATATTTACTTGGTGGGGGAGAGTTGCTTCtcaacaattcaaaatatgcCTCTGGACCTTGCTGTATCTCTAAACTGCTCTGGGGGATCAGCGTGAAAGGGCTCTGTCCACCCACTGTATTGCTGAACTTCATCCAAGTGTGGAAATGTGCTCCTGGAAATTGAGTGCTTGTATGCTTCTTAGTAGGTGCTGATTAGATATACAGTACAGGGGTGTAACTTTCCTTTCAAAAGTCATTTCAgtcaagggggtggggggaagctGGGTAATTTATAAGCACTTTTCAACAATCCATTGGCCGACCTGGGCCACATAGTAGAGTTGCACTCTTTTTGTTCAACTGATGGTTTTCAATACTGTCTTGCTAAACCAGGGGTGTGAAAGTCAGTGCTTTGGGGGGGGCTTCAGTCTCGTCTGGTTTTCTTTCCAATTGCAGTACTCAGTTGCTATATAGTGTGATTTCTGCTTAggcaatttttttaattgtcacaatatcaacatttctttattcatgtcttgattttgttttccccctaCAATATCTGCGATACGATATTTAAATTAGTTCACAATGGTACAAACATGTAATCCTATTGGACAATGAATCAACATTTTTGTATACAAATACAGGTCTATAATAGGGCATAATGTGCATAAAGTTACtataaagtaatattaaaataactttaataaacCTG

Function

GO:

id name namespace
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function

KEGG:

id description
K03951 NDUFA7; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196378 lncRNA downstream 94140 15002410 ~ 15004191 (-) False AMCG00006102
TU196367 lncRNA downstream 116710 14980384 ~ 14981621 (-) True G155899
TU196366 lncRNA downstream 116710 14981103 ~ 14981621 (-) False G155899
TU196235 lncRNA downstream 528495 14569562 ~ 14569836 (-) True G155783
TU196218 lncRNA downstream 606402 14489290 ~ 14491929 (-) True G155768
TU196477 lncRNA upstream 75519 15179051 ~ 15217634 (-) False G155989
TU196494 lncRNA upstream 101337 15204869 ~ 15212286 (-) True G156002
TU196476 lncRNA upstream 101784 15205316 ~ 15217634 (-) False G155989
TU196500 lncRNA upstream 103988 15207520 ~ 15298400 (-) False G156003
TU196478 lncRNA upstream 111598 15215130 ~ 15217634 (-) True G155989
AMCG00006100 mRNA downstream 9423 15080401 ~ 15088908 (-) True AMCG00006100
AMCG00006098 mRNA downstream 20563 15074200 ~ 15077768 (-) True AMCG00006098
AMCG00006097 mRNA downstream 37570 15050921 ~ 15060761 (-) True AMCG00006097
AMCG00006095 mRNA downstream 53840 15042183 ~ 15044491 (-) True AMCG00006095
AMCG00006103 mRNA downstream 66528 15030987 ~ 15031803 (-) True AMCG00006103
AMCG00006099 mRNA upstream 800 15104332 ~ 15123328 (-) True AMCG00006099
AMCG00006101 mRNA upstream 57789 15161321 ~ 15181317 (-) True AMCG00006101
AMCG00006080 mRNA upstream 274690 15378222 ~ 15390581 (-) True AMCG00006080
AMCG00006081 mRNA upstream 293720 15397252 ~ 15400964 (-) True AMCG00006081
AMCG00006079 mRNA upstream 365709 15469241 ~ 15480318 (-) True AMCG00006079
TU196327 other downstream 314325 14782631 ~ 14784006 (-) False AMCG00006043
TU196273 other downstream 415370 14679797 ~ 14682961 (-) True AMCG00006037
TU196220 other downstream 588717 14509233 ~ 14509614 (-) True G155770
TU196147 other downstream 757668 14336891 ~ 14340663 (-) True AMCG00006013
TU196074 other downstream 926724 14168090 ~ 14171607 (-) False AMCG00005997
TU196602 other upstream 329900 15433432 ~ 15436866 (-) True G156088
TU196604 other upstream 385870 15489402 ~ 15491642 (-) False G156088
TU196760 other upstream 850544 15954076 ~ 15957090 (-) True G156206
TU196870 other upstream 1350837 16454369 ~ 16462159 (-) False AMCG00006083
TU196884 other upstream 1402061 16505593 ~ 16518111 (-) False AMCG00006118

Expression Profile