RNA id: AMCG00006096


Basic Information

Item Value
RNA id AMCG00006096
length 1815
RNA type mRNA
GC content 0.51
exon number 5
gene id AMCG00006096
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14981801 ~ 14992261 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTGTAAATGATGTCATGATGTTGTTGTCCACAAGAAGGAAAGTGCGCATGGATGTTTTACGTAAGTGGTCATTTACAAACTGTATTTGCTAGCTGTCGTTCATACAATGAGCCAGGTTGAATACAGTGTGTGGCTCAGGTTGTAGTCTACACTGAGACAAAGGTTCACTTTGGCCTCTCCAATCGAGTTATTGATTAGCAGTTGCTTACATATCTGACTTCACAAACAATTTACAACCTTGGCTTGCACCCAGCAGGATTTTATCATCCTTACCCTGATGGAGCCTTGATCTGTCCAGGTCACAACAACTCACACTTTAAGccatttgtaaaattaaaacatcactGAATAAACTTTagactacattttaaaaactattgcCCTGCAGttcttaaacataaaaaaacccCAAACCAAcataaacccacacacacaaaactccTTTCAGTAAATCATGGGTGaaagtattcatattttatttatttagtcataattatatactttttatgtgCAATGCAGTTCAGGAATGTATTGCTATGGTACATGCGTGacagtccagtgtgtgtgtgtgttttggggggtgTGATCGGgggctataaaaaaaaaaaacaatgcagataGCATCTCAGGATGATGTCTCCAGGGGAGGGgatgggaaataaatattgtggGCTCATTCGCGTTTTAATCGTGTTTCCAATGTGAAGCACAGTCTCGGTCAATGATATCATGACGTGCCAGGTTGCGTTTCCCGTGCAGAATGCAAAAGTAAAAGATGAATGTTTATCTATCCAGCAACTTTGCCATCCGCGCcgcatcctcctcctcctatcTTTCCTTGAACCACTACAGCTGCGTCCGTCGCTCAGTCCGGGGCTCCGGCTCGGAGGTCCTCCCGCCGCTCACCACTCCTCCACGGCCCGGTTCGAGTCCTCCTCCCCGGCCACGGCGCAGTCCAGCCTCTGTATTCCGGGAAGAGCCAAGTCCCTCTCGTTCAGTTTCTCCAGAAAGGAGGAGAGAAGCCGCTTGTTGAGGGAAGCTTCCGGAGGAATGCCGAAGAAGTTCCAGGGCGAGAACTCCAAGTCGGTGGTGGCGCGGGCGCGCAAAGCCGATGCCAAGGCCCAGGCAGACGCCCGCAAgaagcaggagcaggaggatGCCTTGTGGAAGGAAGATGACAAACATGTCCTGAAGAAGGAGCAAAGGAAGGATGAGAAGGAGAAACGGCGACTGGAGGCCTTGGAGCGGAAGAAGGAAAATCAGCGGCTCCTAGAGGAGGAAGATGCCAGGCTCAAGGGGAAAGCCAAGACTGAGGCCCCGGTGGGCAAAGTAACCCGGGCGCAGATTGAAGACACCCTTCGTAAAGAGCAGCAGACTCCCCCCAAGGAgaaagAGAAAATCGTGACCCATCTGGACACCCCGCTGGAGGAGAACATGAACCGTGCCGACACCGACGCCATAGAGGCCAGGACTATTGAGGATGCCATCGCCGTGCTCAGTACGGAGAACGAGCTTGACCGGCACCCCGAGCGCAGGATGAAAGCGGCATTCGCCACCTTCGAGGAACTGCACATGCCCCGGCTCAAGAAGGAGAACCCCAACATGCGGCTCTCCCAGCTCAAGCAGCAGCTCAAGAAGGAATGGATGAAGTCCCCAGACAACCCCCTGAACCAGCGCTTCTCCACGTACAACGCCGCCAAGTAGAGAGAGCAAACTGACATCTCTGGCCGACAGCCCGACGCCTCACACCCACCGGTTCCTCGAGGGAGAGACGCCCCAGAAAAAGTAGCACCCTCTACCAAGGATACTGAAGC

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0030496 midbody cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196367 lncRNA downstream 180 14980384 ~ 14981621 (-) True G155899
TU196366 lncRNA downstream 180 14981103 ~ 14981621 (-) False G155899
TU196235 lncRNA downstream 411965 14569562 ~ 14569836 (-) True G155783
TU196218 lncRNA downstream 489872 14489290 ~ 14491929 (-) True G155768
TU196199 lncRNA downstream 557055 14422504 ~ 14424746 (-) True G155754
TU196378 lncRNA upstream 10149 15002410 ~ 15004191 (-) False AMCG00006102
TU196434 lncRNA upstream 108048 15100309 ~ 15105533 (-) True G155957
TU196477 lncRNA upstream 186790 15179051 ~ 15217634 (-) False G155989
TU196494 lncRNA upstream 212608 15204869 ~ 15212286 (-) True G156002
TU196476 lncRNA upstream 213055 15205316 ~ 15217634 (-) False G155989
AMCG00006033 mRNA downstream 50416 14920403 ~ 14931385 (-) True AMCG00006033
AMCG00006032 mRNA downstream 74643 14889140 ~ 14907158 (-) True AMCG00006032
AMCG00006044 mRNA downstream 106080 14866709 ~ 14875721 (-) True AMCG00006044
AMCG00006046 mRNA downstream 121066 14852157 ~ 14860735 (-) True AMCG00006046
AMCG00006047 mRNA downstream 129922 14850781 ~ 14851879 (-) True AMCG00006047
AMCG00006102 mRNA upstream 6239 14998500 ~ 15007979 (-) True AMCG00006102
AMCG00006103 mRNA upstream 38726 15030987 ~ 15031803 (-) True AMCG00006103
AMCG00006095 mRNA upstream 49922 15042183 ~ 15044491 (-) True AMCG00006095
AMCG00006097 mRNA upstream 58660 15050921 ~ 15060761 (-) True AMCG00006097
AMCG00006098 mRNA upstream 81939 15074200 ~ 15077768 (-) True AMCG00006098
TU196327 other downstream 197795 14782631 ~ 14784006 (-) False AMCG00006043
TU196273 other downstream 298840 14679797 ~ 14682961 (-) True AMCG00006037
TU196220 other downstream 472187 14509233 ~ 14509614 (-) True G155770
TU196147 other downstream 641138 14336891 ~ 14340663 (-) True AMCG00006013
TU196074 other downstream 810194 14168090 ~ 14171607 (-) False AMCG00005997
TU196602 other upstream 441171 15433432 ~ 15436866 (-) True G156088
TU196604 other upstream 497141 15489402 ~ 15491642 (-) False G156088
TU196760 other upstream 961815 15954076 ~ 15957090 (-) True G156206
TU196870 other upstream 1462108 16454369 ~ 16462159 (-) False AMCG00006083
TU196884 other upstream 1513332 16505593 ~ 16518111 (-) False AMCG00006118

Expression Profile