RNA id: AMCG00006097


Basic Information

Item Value
RNA id AMCG00006097
length 4742
RNA type mRNA
GC content 0.44
exon number 2
gene id AMCG00006097
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15050921 ~ 15060761 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTACAAGATCCAGGTCCTGGGAACAACCAGCTCCCCCGGCGAGATCCCAGCTaGTGCAGAGATGAGATGGAGAGCTCGCTATTTGGAGACAGCTCTGCTGCTTGTGGTCGCCACCTTGTTCCTAGTGTTCTTTTACAGAGAGGACCTTACCGGGGAGCTGATTGTAGGCAGACGAACCACTCTAGTCACGGCTGCACCGCTCCCCGAAACCGTCAGATTCCAGCTGCCTTTGAAACCACCGTCTCCGTGTGAGGTGAACGCCACTGCCGCCAACATCTCTGGTTTCGCCACCCTCCCAGAGAACATCAAGAACTTCTTGTGGTACCGCCACTGCCGCGAGTTTCCCATTATCCTGGACGTTCCCGAGAAGTGCGGAAAGACGCCAGAGGATTCGGTGGATGTCTTCCTGCTGCTGGTGATCAAGACCTCTCCGGGGAACTATGACCGCCGTGAAGTGATCCGGAAGACGTGGGGGAAGGAGCGGCTGCAGGACGGCGTGTGGGTGCGCCGCCTCTTCGTGGCGGGGGTGGTAGGCAACAACCGGGAGAGGCGCAAGCTGAACCGCCTCCTAGAGATCGAGCACCGCGAGTACCAGGACATCGTACAGTGGGACTTCGACGACACGTTCTACAACCTCACTCTCAAACAGCTCCTCTTCCTGGAATGGATGGAAGCCCGGTGTCCCGAAGTCCACTTCCTGCTCAACGGTGATGACGACATCTTCGCCAACACCGACAATATGATACAGTACTTGCAGGGCTTGGAGGGCAACGACGGGAGCAAACACCTCTTTGCGGGCCACCTCATCCAATACGTGGGCCCCATCCGGGAATCTGGCAGCAAGTACTACATCCCGGTTCAAGTCCAGGAATCCAACTCGTATCCTCCGTACTGTGGTGGAGGGGGCTTCCTTCTCTCTAGGTATACTGCTAGGACTATCTACAACATGTCCTTCTCTATTCCCCTCCTGCCCATTGATGATGTTTACATGGGTATGTGCCTGCAAAAGGCCGGCCTACGCCCCGAGTCACACGCCGGGGTTCGTACCGCAGGGCTACACGTGCCCTCTCAAAAGTTTGACTCTTATGACCCCTGTTATTACCGGGAGATTCTGTTGGTGCACCGGTTCCTGCCGTATGAAATCTTAGTCATGTGGCAAGGTGTCCATGAGCCCGGGCTCAAATGTGGCATTTTTGCATCGAAGCATCTTTAGCACTTTCCACCCAGCAAACTAGTATGGACCTCTCCAAAAGACAAGTTTTCCAGATGAGATATGGGCTGCACTGTGACCCACTTTCCTGACTCTGTGTCTCTGAGCCTGACACGTGGTCATGTTGCCCAAgacattctgtatttgtttgtgggtttttgttttgttgcttggAAGCCGAGAGcctacatttctgttttgctgaGGCTGGCGTTGTGAGGAAGCTGTTAATTCAAGCCATGCCAGAAAAGTGTCACCAGCAGTTACTAAGGTCTTCCTGTTTTGCCTCAATTGGGGGAGGGGAATGTGTTAAGCTTTATTGTTGGTAAAAGAAAGaatctataaatacataaagccAGTACACACTCATTTGTTGTCccaactttttttaaatctttttttttttttttcctgtgaccTGTAATATTAAATGCCTGTTGTCATATGACTTTTTCAATCCTGCTGTTGGCAAATTTGGTAAAGGCACTGGAACAACATTCTACTAAATAAATTGGTGATTTTTCAGTGCTTCGTATTTGTCTACAGCAGGAGGATTTTGCTCCTACACTATGCAATTAACTGTTGCTGTTGTTCATTGTTGACTTGTTTGATGTTGGACTTTGCATCACCACACTACCCTCAATTaaggaataaattaataaatcggAGGTACATGCCGCCTTTAAAACCCTCAAAAGAATTTAGCCTTTGCAGCTTATTGGGAGACTGTTTTAGCTGCATTGGACATGTTTGTCTCCAGTCATCTTCAGGAAATCCATGCAATTGCTTTGTTTCAGAATGAGATGGTTTATTCCCTccatgattgtgttttttggcCTCCATTTCTAATATGACAGTTTGTATAGCATTGCCAAGACTAACCATCATACTCCGGCGGGGGGGCGGGAATCgtaatattttattcacacCACAGTTGGACGGAAACCCCGTCTTCCCACCTACTTGAAAGGTTTTCAATTCggttcaatttttatttgtatagcacccttcgcaaggtagccacagagtgctttacagagtggtaaacatacaacagaTATACAGCAGaataaaagaatacatacataatacaataaagtaaaataaaaatagacctctaacagtttaaatgatctaaaataaagtaaattaacatttaaataaaccatttaggcacgggggaaaagaaaaatagctcgtcagaccttggggtgtgggtgtACCGTTAGCCCTCCGTGGTGGGGGTCCTCTGAggtgggttgtgcctcgtcGGGCTTCGacggtgggggacgaggtgcctcatcgcaccctcagagggggctgttgctggaagacaaaaagacaggtgtgctcagatactggtcatgcagtgcaggacatctccaaatacaattgtgcattgcatgtccatggcacagcggcggcactatgggctagaaaaacagaaactaaacagatgagtcttcagccacgatttaaaggctaagacagagtgGGCATTACATTGGCTGAGAGATCATTCCTCAGTtttggggccctataactgaatgctctcccacctgcggttttcttgtgtattttagggagcactaagtaaccggcttcctgggatctcaatggctgacctggagtgtatttgaTAAGGAggtcttttaagtagggaggtgccagtccctttagtattttaaatgttaataagagaacTTAAAAGTCTGTCCTATAGTGCACGGGCGGCCAgcgaagagaagccaatactggagtgctgtgatcatgtgtttttgttttaattagaattcTGATTTGaataactgaagtgcagaaacaGCTTgatttgtgctgcctgacagaattgCATTAGAGCAGGGGTTCCTAAAGTGCGGCCCGGTGGCCAAATGTGGCTCTCAAGGATGATTGGTGCAGCCCCCCAAAGCccaccttcaaccaccccttttctgaacatttactatatttatatagtgggacattttgttttcatcagtggttcattttctacttggccccccccatcccatgcaacctccggaaattggccctccatcaccaaacattgggaacccctgcattagagtaatccaatctagatgtaacaagtGTGTGTATCAATTTCTAAATATcgtgtaatgagaggaattgtcttagaattgtctagcaatgtttctgagctggaggaaggaagatctcgacacattctgattCTGTGTGATTCACAGGATTAtggtcacagatgacacccaggttctGTGCAATCTCCTTAGGCGAGAAATTAAAGTtgtcattactcagttttgtcagtgtgtgaTGAACAGATGGATTTTTGTCCcgtaaaattaggacttctgttttatcagaattaagcataagaaaatgacttgtcatccatgttttaatctcggaCAGACAACAGATTAGTCTTTctatgtctatggtattgttagggtttactgacaaatataattgtgtgctGTCTGCGTAattgtgaaagttaatattgtCGTTGAGTGATATCACCTAATCCAGTAATTTCTAACTGGACGTCAGGCCCTGTACAACTGGTGAGGTCGTGGTACAGAGATATCTGGGTTCCTAAAACCTTATCCTctgttacatttgaaaatgtctcaAAGTGACAAAAGGcagtgaatttgtttttctttctcaaaggTCACTGAAACAAGCATATTGCCTCTTTCCAATTTTTAACTTCCCATCCTCGGTCTGCTCAGCAATTCCATAGCCTAACATGCTTCCTGCCCTTCCTATCCTGAATCATTTGCCTGCCAAggtaatcattattataattcttatttgtaattgtgttgtaaCTATATACTCCTATATATAATGCTAGGGGGACTGCAACTGCAGTTGGATCAATGGTAACTGTTGTCTTGATTTGTCTTTATAAGATGTGACCAAGCCTCTCAGGGTGTTTTTGCTGACAATGTAatgaattgaatgtattttttggtaTCCCCTCGTTCACTGTGGATAAGCAGTAATGAGGTAggtataatatattttcagattttccaaTCTCTTTGCCTTGCACACTGCACTTATGAAATGTGGAGACATCCCGAACCTCGGGCAATAATTCTGAACTACAAAGCAGAGCACATGGTACCAACCTGGTATTAAAGGTGTGTCTGATCTCTGTTCTCCAGATTCTTTGATTTTACTGACGTTACCTTTGTTGTTCAAACTATGCAACACTAGCCAATCTTGAATTAAAGAATCCTTCAATATATGCAGTCAAATACAACTATTCAGAAACTGAAGGCatgttttgtactgattgtgCATACTGGTAAAAGGGAAATAAGCTTTTCAACCACAATGTTTTAAAGTCTTACATTTTCTGTCCTTGCACAATCCTTAAaattgctgtatttatgtatttattctaaataaatgtatcaagaTTTCAACCTCGGTGCAATCAGTCTGACTATGGGAATGAATGGGTGACTGATTTGAAATTGTTCtccctaaaataaaatgatcaaaga

Function

GO: NA

KEGG:

id description
K07970 B3GNT3; beta-1,3-N-acetylglucosaminyltransferase 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196378 lncRNA downstream 46730 15002410 ~ 15004191 (-) False AMCG00006102
TU196367 lncRNA downstream 69300 14980384 ~ 14981621 (-) True G155899
TU196366 lncRNA downstream 69300 14981103 ~ 14981621 (-) False G155899
TU196235 lncRNA downstream 481085 14569562 ~ 14569836 (-) True G155783
TU196218 lncRNA downstream 558992 14489290 ~ 14491929 (-) True G155768
TU196434 lncRNA upstream 39548 15100309 ~ 15105533 (-) True G155957
TU196477 lncRNA upstream 118290 15179051 ~ 15217634 (-) False G155989
TU196494 lncRNA upstream 144108 15204869 ~ 15212286 (-) True G156002
TU196476 lncRNA upstream 144555 15205316 ~ 15217634 (-) False G155989
TU196500 lncRNA upstream 146759 15207520 ~ 15298400 (-) False G156003
AMCG00006095 mRNA downstream 6430 15042183 ~ 15044491 (-) True AMCG00006095
AMCG00006103 mRNA downstream 19118 15030987 ~ 15031803 (-) True AMCG00006103
AMCG00006102 mRNA downstream 42942 14998500 ~ 15007979 (-) True AMCG00006102
AMCG00006096 mRNA downstream 58660 14981801 ~ 14992261 (-) True AMCG00006096
AMCG00006033 mRNA downstream 119536 14920403 ~ 14931385 (-) True AMCG00006033
AMCG00006098 mRNA upstream 13439 15074200 ~ 15077768 (-) True AMCG00006098
AMCG00006100 mRNA upstream 19640 15080401 ~ 15088908 (-) True AMCG00006100
AMCG00006094 mRNA upstream 37570 15098331 ~ 15103532 (-) True AMCG00006094
AMCG00006099 mRNA upstream 43571 15104332 ~ 15123328 (-) True AMCG00006099
AMCG00006101 mRNA upstream 100560 15161321 ~ 15181317 (-) True AMCG00006101
TU196327 other downstream 266915 14782631 ~ 14784006 (-) False AMCG00006043
TU196273 other downstream 367960 14679797 ~ 14682961 (-) True AMCG00006037
TU196220 other downstream 541307 14509233 ~ 14509614 (-) True G155770
TU196147 other downstream 710258 14336891 ~ 14340663 (-) True AMCG00006013
TU196074 other downstream 879314 14168090 ~ 14171607 (-) False AMCG00005997
TU196602 other upstream 372671 15433432 ~ 15436866 (-) True G156088
TU196604 other upstream 428641 15489402 ~ 15491642 (-) False G156088
TU196760 other upstream 893315 15954076 ~ 15957090 (-) True G156206
TU196870 other upstream 1393608 16454369 ~ 16462159 (-) False AMCG00006083
TU196884 other upstream 1444832 16505593 ~ 16518111 (-) False AMCG00006118

Expression Profile