RNA id: AMCG00006098


Basic Information

Item Value
RNA id AMCG00006098
length 1657
RNA type mRNA
GC content 0.58
exon number 2
gene id AMCG00006098
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15074200 ~ 15077768 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATCGACACCCTGGCTGCCACTAAGAGAAGCGCAATGAAGAAACTGAAGAAGAGGCGCTCTAGCCTCTTCCCCAACCTGAAGTTTGGTGACAGCTTCAACTACTCCCAGAGCACCGATGATGATGACAACAGCTTCCCCTTCTCCATGGACAGCTCCGTCAAGCAGTGGACGTCCATGCACAACCTGGATAGCCCTCTGGACTCGGGAGGGGAGGGCTGTGGGGAAAAGTGCAGGGGCCATGGGCCGTACTGGTCTTCCCCGGGGAAGATGCACATGATCAGCCTCAATGTCGGGGGCAAGGTGTTCCATATCGCGAAGCACGTGGCCATCCGTTTCCCCCACACCCGCATCGGGAAGCTGGCTCTCTGCACGGACCCGGTCAAGAAGATGGAGCTCTGCGATGACTATTCGGTTCTCACCAATGAGTACTTCTTCGACCGGGACCCCACCTTCTTCCACTACATCTTCCACTACTACCGCAGCAAGGTGGTGTGGGTGATGCAGGAGCTGTGCCCAATCAACTTTGAGGAGGAGATGGACTACTGGGGCCTGCGGATGAGGGACACGCAACGCTGCTGCCGCATCCTCTTTGAAGAGAAAGTGGACGAGCTGAAGGAGTACCTGAAGGTGCAGCGGGAGCTGATGGCCGAGATCGAGCCCGAGCACAAGGAGGAGCACTTTGAGGGCATGTTCTTCTGGAGGTTCCGCAAGGCCTTGTGGGATCTGATGGAGAACCCCTACTCCTCGGTGTCAGCCAAAACGTTTGCTGTCCTCTCCAGCATCTTCGTGGTGATCTCCATCGGGGCCATGACTCTCAACACAGTGGACGACCTGAAGTACTGCAAAATCAAGGGCAAGACCTACATGGAGTGCGTGGAGATGTTCAGTATTGTCTTTTTCACCTTGGAGTACTTCCTGCGCCTCCTGACTACCTGTAACATCAAGCGCTTCCTGCGCAGCGCCCTGAACTTCGTGGACCTGGTGGCCGTCATGCCCTATTTCATCCAGATTGTGTTCGAGGCGTTCGTTGACAACACCGACCTCAGCTACCAGGATGACCTGCAGGCCATGGAGCGGGTCAGCAAGATCAGCAAGGTGCTCAAGGTCATCCGCCTGATGCGCATCTTCCGCATCCTCAAGCTGGCCCGCCACTCCACGGGCCTCCGGGCGTTCGGCTTCACCATCCGCCAGTGCTACCAGCAGGTCTGCTGCCTCTTCCTCTTCATTGGCATGGGCATCTTCACCTTCTCCGCACTCATGCACTCGGTCGAGCACGATGTCCCAGGGACCCCCTTCAGCAGCATCCCCGGGGCTTGGTGGTGGGCTGCGGTGAGCATCTCCACAGTTGGCTACGGTGACACAGTGCCGGAATCCTTCCTGGGCCGGCTGGTGGCATTTGGCTGCATCTCTTTCGGCATCATCCTGAACGGCATGCCCATCTCCATCCTCTTCAACAAGTTCTCCGACTACTATGCCAAGCTGAAGGACCAGGAGTCCACCAACAACATGAAGCAGCGGGGACGCATCCAGCTCCACGTCCGTGTGCGCCGCAAACTGGAAGAGTGCATGAAACCCCAGACCCTGGACTCAGAGGAGGAGGACTCCCTCTACCGCCATGGTGCCCACTCTGAGGCCCACCCCCACCAGTGCCACCAC

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005251 delayed rectifier potassium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196378 lncRNA downstream 70009 15002410 ~ 15004191 (-) False AMCG00006102
TU196367 lncRNA downstream 92579 14980384 ~ 14981621 (-) True G155899
TU196366 lncRNA downstream 92579 14981103 ~ 14981621 (-) False G155899
TU196235 lncRNA downstream 504364 14569562 ~ 14569836 (-) True G155783
TU196218 lncRNA downstream 582271 14489290 ~ 14491929 (-) True G155768
TU196434 lncRNA upstream 22541 15100309 ~ 15105533 (-) True G155957
TU196477 lncRNA upstream 101283 15179051 ~ 15217634 (-) False G155989
TU196494 lncRNA upstream 127101 15204869 ~ 15212286 (-) True G156002
TU196476 lncRNA upstream 127548 15205316 ~ 15217634 (-) False G155989
TU196500 lncRNA upstream 129752 15207520 ~ 15298400 (-) False G156003
AMCG00006097 mRNA downstream 13439 15050921 ~ 15060761 (-) True AMCG00006097
AMCG00006095 mRNA downstream 29709 15042183 ~ 15044491 (-) True AMCG00006095
AMCG00006103 mRNA downstream 42397 15030987 ~ 15031803 (-) True AMCG00006103
AMCG00006102 mRNA downstream 66221 14998500 ~ 15007979 (-) True AMCG00006102
AMCG00006096 mRNA downstream 81939 14981801 ~ 14992261 (-) True AMCG00006096
AMCG00006100 mRNA upstream 2633 15080401 ~ 15088908 (-) True AMCG00006100
AMCG00006094 mRNA upstream 20563 15098331 ~ 15103532 (-) True AMCG00006094
AMCG00006099 mRNA upstream 26564 15104332 ~ 15123328 (-) True AMCG00006099
AMCG00006101 mRNA upstream 83553 15161321 ~ 15181317 (-) True AMCG00006101
AMCG00006080 mRNA upstream 300454 15378222 ~ 15390581 (-) True AMCG00006080
TU196327 other downstream 290194 14782631 ~ 14784006 (-) False AMCG00006043
TU196273 other downstream 391239 14679797 ~ 14682961 (-) True AMCG00006037
TU196220 other downstream 564586 14509233 ~ 14509614 (-) True G155770
TU196147 other downstream 733537 14336891 ~ 14340663 (-) True AMCG00006013
TU196074 other downstream 902593 14168090 ~ 14171607 (-) False AMCG00005997
TU196602 other upstream 355664 15433432 ~ 15436866 (-) True G156088
TU196604 other upstream 411634 15489402 ~ 15491642 (-) False G156088
TU196760 other upstream 876308 15954076 ~ 15957090 (-) True G156206
TU196870 other upstream 1376601 16454369 ~ 16462159 (-) False AMCG00006083
TU196884 other upstream 1427825 16505593 ~ 16518111 (-) False AMCG00006118

Expression Profile