RNA id: AMCG00006099


Basic Information

Item Value
RNA id AMCG00006099
length 4512
RNA type mRNA
GC content 0.54
exon number 13
gene id AMCG00006099
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15104332 ~ 15123328 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCAGATTCTCTCTGACGTGTGGCTCGAGGGGAGAACAGGGCTGGCACCAAAATAGAACTAAACTTATCATCTCGGAGAGTTGATTGCACTCGCGCTACGTGGAGACTCGCAGGGGACGAAAGCTGCCGGGAAAGGGGGAAGGCAGAGCCGAGGGAAAGGTTAGGGGATGTTGTGACCTGCCGTTCCGAGCCAGAAGAGCAGGAGCAAGACCAGTCAAGAGAAGAGCCTCGAACAGCATTTTGTGCAGCTGGGCGGCAGGGGAAGAAGGCTGTAGGGTCCCTCGTTAAGGTGTGTGAGGGAGATCTGGGGGCTCCTTTCCTCTACGGCACCCAGGAGCAGACGGAGCAGGGGGGCTCCTATTCCGTCCAGACACCCTATGGGTTCCAGCTGGATCTGGACTTTCTCAAGTATGTGGAAGAAATCGAGAGTGGCCACAACTTTCGTCGGGTGCCCGTTAACCCTCGGCGGGGTACACGGAGCACCAagtcctcctctctctctcagaggagCCCGGGGGCCGGTGGGCATACCAGCGGCTGGACCTCCACAGAGTCCCTGTCCTCCTCAGCCAGCGAGGAGGGCCGGGCACCTCCCTTGCCACCGCCCAGAATCCGCACCACCTCGGCCCCCTCAGAagcactccctctctctcctgtcccaTTTACCAGCCCCCCACTCTCTGCCGGTCCTAGAGTACCACCCCCCCCTCCAGTCCGTAACCACAGAGTGGAGAGGACCTTACTGGAGACCAGTCGCCGGCTACAACAGGAACAGACGCAGCTGCATAATGTCTCTGGCTTCAAACTTGCAGACCCTCCCAGACCTGGTGCCAAAGAATTAGGGAGGCCAGCTGCTACCCCAACCATTCCTTCTCAATTGTCCATTCTTACAGGCACTTCTGGTGACCTCCATGCACCCCCTTCATCCTCTGCTTCCCTCAGCCCGTCCCAGGGCAACTGGACCAGAGCGAGTCCACTCAATTCTGGCAGAAGCACCCCAGCTTCAGGAGGCCTCTCTGCCACTGGCCTAGCACAGATCCCACCCACCCAGCTCCAGACGGTGCGTGAGCAGATGGCGGCCGCTCTGAAGCAACTCAAGGAGATGGAGGAACAGGTCAAGGGTGTGCCAGCGCTGGAGAGAGAAGTGACCAAGCTGCGCGCCGAGAAGGATAGGCTGCTGATGGCTCTGCGAGAGAAGACTGGAGGGGGACCAGGAGTCCAGCAGAGGTCCTTGAGCACAGGGAATGGTGctgaggaggagggggaaggggaggcCCAGGCTAGGCCTCCGCCATCGCCCAGCCACATCAGGCCCAGCAAGCTGGCAGAGCTGAGGAAGTTGACGGAGAAGCTGGGAGGCAAAGAGGAGAAGGAAGGTGAGCAGGCAGAGAGAACAAAAGTGAGGGATAAAACGGATGTGGAGAGAAGGTCTGTGGCAGTAGGGGAAGATAGGTTGCTTGAGGAGGGCGTGTTTTACTACCGGGGGGGAACGAAGGAGGCCTCGGTGAGCACTGAGGCTGTGGCAGCTTCAGAGAAAGGAGTGGGAACAGATACAAAGGAAATGCGTGAAGCTGGGGTGGAGGCCAAAATGGAGACTGAAGATGCCTCAGTGTGGGTGATGGAGTCCTTGCTTGGGCTGAGGAGCGAGGCTGAGAAGGAGATTGAAACCTTGCAAGATACCATAAAATTCCAGCAGGAAGCCATACAGGTGCTGGAGGGCCGTCTCTCCCAAGCAGATCAGGAACTGAAAGTGCTGAGAGACCAGGAGGAtcagaggaagaagaggagcaCAGCAGAGAAGGGCGTCCATGTTAGACCAGACACTGCCAGCGTCCAGGTGGAAGCCGTGGTCTCTCAAACCAGCACCGCCGTGGGGGCCAAACTGGAAGAGTCAAAGGAAGTGTGCAGTGTTGCGGTGCAATGTCAGTGCGAGGTGGAGGATGCAGGCGTTGGGCAGGAGTTGGCGCCACAGAAAGACCAGAACACTCAAACTGAGCCGAGAAGCAGACCAGTCACCAGCACTGGGAGCCAATGGGAGAATCCAGAAAGAGAAGCACAGAAAGTTGCTGACCACAAATCTCCTGTGCCCGTTCTGAAGAGGAGGCAGGTGACCATCACAGAGCACACTGTCACTTCTAGCCTAGGTGCGGTCAGTGTGATGACGGAGAGAAGGAAGGCCAAGGAAGAGGAGACTATTCCCTTCAGCCCAGCTACAGGTGTGCTGAAGTCCATTATGAAGAGGAAGGATGGGAGTGCCCAGGGACaagccagcagcagcagcaagaagaGCCTGCAGTTTGTGGGGATTCTCAATGGGGGGTATGAGTCGACGTcgagtgaggaggaggaagaggagggagacgGAGAGGAGGGGAGCTCGTCGGGGGGCAGCGGGGTGGGCGGCAGCTCCGACAGCAgcgagggagaggagggggcgCTGGTTGACACCTCGGAGGACGAGAGGAATGTCAACCTGGATGACAGCGACAGTGATGTGGAGGGGACGGGggcagagaacaaacaaaagcagcagaGTGCGGTGAAAGAAAAGTTTGAGCTGAGTATGAAAATGCGGGAGGCGTGCCTCATTCTGAAGAACCACCTTAACGATGATGTCAATGCTCTGAAGAGCAAAGAAGTGCTCTCGAGCACTCACACGGTCCAGCAGGAGTGGTTCCGTGTGTCCAGCGCCAAGACGGCCGTCCCGTCCCGCGTGGCTGACTACCTTATGGCATTCTCGGAGGTGTCCCCGGCCCTGCCGCGCCACGTGGTGAACATGACGGATGGAAACGGCAACACCGCCCTGCACTACAGCGTCTCACACTCCAACTTCGCTGTGGTGGGACTCCTGCTGGACACGGGCGTGTGCAGTGTTGACCACCAGAACAAGGCAGGGTACACGGCCATCATGCTAGCTGCTCTGGCTGCAgtgaagagagaggaggacatGAGGGTGGTGAGGAAGCTCTTCAGTCTGGGCAACGTCAATGCTAAGGCCAGCCAGGCGGGGCAGACGGCCCTGATGTTGGCAGTCAGTCACGGACGGCAGGACATGGTTCAAGCCCTGCTGGACTGCGGCGCCAGCGTCAACATCCAGGACGACGAGGGCTCCACCGCGCTGATGTGCGCCAGTGAACACGGGCGCGCCGAGATCGTCAAACTGCTTCTGGAGCAGCCTGGCTGTGACATCTCCATTGTGGACAACGATGGCAGCAATGCTCTCTCTATAGCCCTTGAGGCCTCTCATAATGACATTGCTGTACTCCTCTACGCCCACATGAACTACTCGAAGTCTGCAGCAGCTGGAACACCCAAGATAACCACAAGAAGCCCCTCGTCCCCATCTAAATCCTGGCCAGCTGAATAACTACTGACTCTCTCAAGACCGCCCCCGCCCCACCCTGCACCCTCACAGGAGCAGACACAACTGGACACTGGGTGCTGCAGCACTGAGCACCTCCCTGCATCCTACTGACAGACAGCCTACATACTcttgtattaaatatgtatttataaaatggtATTAGTAATACATGTATCCATGTTAAATATCTGATACATTACGCTTTTCCATCAATATTCAAGAATAATTGTTTACCCAATGTTAATCTTCCCatcctttttatttgtgtgtccCAGAAATCTTAAACACCACACAGACCAAGCATAGTTTTAGATTGAGCAAGAATGGTTCCTAGTTTACAACTGATTTTCAAATGTGTGAAAGGCAGTAAAGAACAGCTCCTTTGCATGCCTTTACCAAAGTTCAGACCAAGTGCTTATTTCTATACAATATTTCCAGTAttagtggaaaaacaaataccccCCTCCTTCCagaaacaattatatttctGCACTAATACCTGTTTATGCACTGTATAttggtttcatttgttttatgattaaaatactttatttacttaGGGATGTTTATTTCCTTCAGAATTTGAGGTGTGAAACCCAGCAACATGCCTATTTTTGGTATATACAATACgtgcagatgcccttatccagggcaacggagaacaaactttacattttactcattaatacagctgggttttttactggagtaatctaggtaCAGTAACTTTCTCAGAAGTACAACAGTGCCCCCCCTCCCTGCACTTGAACACACAACCATCTGCTCCCTCTCTATAATTGACTGAACATATATAAAGCTTCATGGAAATCcaaatacatattcagaaataaacaatgacaATTAATTGCCAATCCAACCTTTATTGTCAAACTGTACACATCGTGCTTTTAACACTGCTTTACAAAAATCAGTGTCCATACTCCACAACAGTGGTCTTCAATGTGGGCGTGTCTTCCATCTTCACAAGGGACTGTAACCAGCGCAGCCTCCTTGCTTCTCTTTCGGACTCCAGCAGGGTGAGCACATCGCCCTCTCTGACTGGGCCCTTCACGTTGCGGATGATGGATCGGTTGCTGTCGTCCATGAACTCGACACGCACCTGCGTACACTGTCCCTGGGAACCGGTC

Function

GO: NA

KEGG:

id description
K22808 KANK; KN motif and ankyrin repeat domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196378 lncRNA downstream 100141 15002410 ~ 15004191 (-) False AMCG00006102
TU196367 lncRNA downstream 122711 14980384 ~ 14981621 (-) True G155899
TU196366 lncRNA downstream 122711 14981103 ~ 14981621 (-) False G155899
TU196235 lncRNA downstream 534496 14569562 ~ 14569836 (-) True G155783
TU196218 lncRNA downstream 612403 14489290 ~ 14491929 (-) True G155768
TU196477 lncRNA upstream 55723 15179051 ~ 15217634 (-) False G155989
TU196494 lncRNA upstream 81541 15204869 ~ 15212286 (-) True G156002
TU196476 lncRNA upstream 81988 15205316 ~ 15217634 (-) False G155989
TU196500 lncRNA upstream 84192 15207520 ~ 15298400 (-) False G156003
TU196478 lncRNA upstream 91802 15215130 ~ 15217634 (-) True G155989
AMCG00006094 mRNA downstream 800 15098331 ~ 15103532 (-) True AMCG00006094
AMCG00006100 mRNA downstream 15424 15080401 ~ 15088908 (-) True AMCG00006100
AMCG00006098 mRNA downstream 26564 15074200 ~ 15077768 (-) True AMCG00006098
AMCG00006097 mRNA downstream 43571 15050921 ~ 15060761 (-) True AMCG00006097
AMCG00006095 mRNA downstream 59841 15042183 ~ 15044491 (-) True AMCG00006095
AMCG00006101 mRNA upstream 37993 15161321 ~ 15181317 (-) True AMCG00006101
AMCG00006080 mRNA upstream 254894 15378222 ~ 15390581 (-) True AMCG00006080
AMCG00006081 mRNA upstream 273924 15397252 ~ 15400964 (-) True AMCG00006081
AMCG00006079 mRNA upstream 345913 15469241 ~ 15480318 (-) True AMCG00006079
AMCG00006082 mRNA upstream 359834 15483162 ~ 15488681 (-) True AMCG00006082
TU196327 other downstream 320326 14782631 ~ 14784006 (-) False AMCG00006043
TU196273 other downstream 421371 14679797 ~ 14682961 (-) True AMCG00006037
TU196220 other downstream 594718 14509233 ~ 14509614 (-) True G155770
TU196147 other downstream 763669 14336891 ~ 14340663 (-) True AMCG00006013
TU196074 other downstream 932725 14168090 ~ 14171607 (-) False AMCG00005997
TU196602 other upstream 310104 15433432 ~ 15436866 (-) True G156088
TU196604 other upstream 366074 15489402 ~ 15491642 (-) False G156088
TU196760 other upstream 830748 15954076 ~ 15957090 (-) True G156206
TU196870 other upstream 1331041 16454369 ~ 16462159 (-) False AMCG00006083
TU196884 other upstream 1382265 16505593 ~ 16518111 (-) False AMCG00006118

Expression Profile