RNA id: AMCG00006100


Basic Information

Item Value
RNA id AMCG00006100
length 2384
RNA type mRNA
GC content 0.58
exon number 15
gene id AMCG00006100
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15080401 ~ 15088908 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCTGTCAGAGGAGGGCAAGCATGGTGCGCGGCTGCGCTGTCGGTCACCTCGGAGCgctctttctctttttacaaGTGCAGACCTGGCCTTGCACCTGGGGTGTTGCAGGTGGCCCTGTGCAAACATGTGAGGAGAGTCAGTTTCCCTGTGCCAATGGGAAGTGTATCCCGAAAATATGGATGTGCGATGGAGATAAGGACTGTGAAGATGGCGGAGATGAGGCGCATTGTTtAGAGCGGATGTGTTCAGGGTTTCGCTGTCAGGATGGGGTCTGTATCTCCCAGACCGGGCTGTGCGACGGGCATGCTGACTGCAAAGACGGCTCAGATGAGCTTGAAGACAAGTGTGCCTTTTCCTCAGATTGTAAGCAAGATGAGTTTCTGTGTGGGAACGGACGCTGTATCTCCACACAGTTCCGCTGTGACGGCACGGACGACTGCGGCAATGGGAGGGACGAAACCGACTGCCAGAATTGTACAGCCGGCTTCTTCCACTGCCTGTTCTCCGGCACCTGCCTCCCCACGAGCAAGCTTTGTGATGGCAGCGCCGACTGCCCGGATGGCACGGATGAGTCGGGGCCGGGATGCGGCCCCCCTCGGCAGCCCCCTGCCACCTGTCACAACTCCGAATTCAGATGCGAGTCGGGGGAGTGCGTGCTTCAGTCGTGGAGGTGCGACCACTCCCCGGACTGTGTCGATGGCAGTGATGAAAAGGACTGTGATCGCAATGAGTGCCTGGAGGACAACGGAGGCTGTTCCTACCTGTGTGTGGACGAGCCTCTAGGCTTTGTGTGCGACTGTCCCAGCGGCATGAGGCTGGTGAGGGACACGGACTGTGAAGAGATCGACGAATGCCTGGATGCTGATTTGTGCAGCCAGCTCTGTGTGCACCTCAATGGGACCTACAGGTGTAAGTGTCATCCTGGATACCTCAAAAACCCCAGTACAGAGGATTGCAGTGCTGCAGGCGAGGAGGCCCTGGTGGTCTTCAGCAGCTCGGTGGGGGTGCGGAGGATCAACTCTGGGAGCCACGAGTACCGAGGAATTGTGGCGGGAGTGCTGGAGCCGGGACCTCTGGCCCTTGATATCCCAAACCGTACTGTGTACCTGGGCAGTCGGAAACAGGGCGCCATATACAGGATGTCGCTGGACAAGACTTCTCAGGAGCCTGTGCAGGTGTTGAGTGGCATAGATGCTCCTGTGGGGTTGGCAGTGGATTGGGTCCATGGCCTACTATACTGGACTGATGCCCGCACCCGGTCTGTCAATGTTGCTCTGCTGGATGGGGCGAAACGGCATCTTCTGATTGGTGGGTTATCGCAACCAATGGGTGTAGCTGTGCAGCCATTGTTGGGACTTCTGTTTTGGTCAGATGTTGGCCGGCCTGCTAGGATCGAGCAGGCTGGTATGGATGGGCGAAACCGGGTGGCACTGGTCACCTCTGCCATCCAGAGACCCGTGGCCATCACTCTTGACATGCCACGCTCTCTCCTGTACTGGGTGGACTCAGGGCTGCGGACAGTCTCCCGGATCGGGCTGGACGGGCAGCACCGCAAGATCGTCGTGGAATCAAACGGCTTCCTGGACAGACCGTTCGGACTGGCTGTGTTTGAGgaccaggttTTCTGGGCCGACCAGGACACTCGGGCCATCTACAGAGCCAACAAGAGGAGCGGCGCCAATGTCCGGATCATGCTTAACAACACGGGATCCATGTGGGGGCTGGTACTGGCTCATCCCGTTCTGCAGCCCGAGGgCCGCAGTGTATGTGTGAGCTCGGGTCTGCTCTGCCCGTTCCTGTGTGTGCCACAACCGCGCTCCGGTGCCGACACTGTGGGGTACGCCTGTGTGGGAACAGAGACGCCAGTCCAGAACAGCAGCGCACCTGATACAGATCCCAGTGAGTCGCACCCAGTCCACCCCACAACCTCCACTGATGGCACTTTCATCGCAGTGCTTTCCCTAATTGTATTCCTCAGCCTGGTCCTGACCGGGGGGGTACTCTGGAGGGCAATGGGGCCGCTCCATCTCCCCAGGACTGCCACCCTGCTGGGAGACATCTCTTCAAAAGAATCCCAGGAATCTCTGGTGCCCCTGAGCCCCTCGGAGTCCTTTAGACCGACGAGCTCCCTGCTGAAGCTGGAAGGAGACGCATCCTGACACTGTTGCTGCTTCAGAGTCTGGTGATCGGACTTGTGCTTGGCTTGCCCGAGAAGACGCACAATAGCCGCCTCTGTCTGTGATCCTAGGCTGATTGCGGATGGACACAAGTATCACAGGGTGCCAGGTGTTCTCCTTAGGGTGTGTGGAAGAAGGTCTGAACTGTACTGTCTTGATCCTagctctttcttttctgtttttttttttttttttttttttttttt

Function

GO: NA

KEGG:

id description
ko03010 Ribosome
ko00970 Aminoacyl-tRNA biosynthesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196378 lncRNA downstream 76210 15002410 ~ 15004191 (-) False AMCG00006102
TU196367 lncRNA downstream 98780 14980384 ~ 14981621 (-) True G155899
TU196366 lncRNA downstream 98780 14981103 ~ 14981621 (-) False G155899
TU196235 lncRNA downstream 510565 14569562 ~ 14569836 (-) True G155783
TU196218 lncRNA downstream 588472 14489290 ~ 14491929 (-) True G155768
TU196434 lncRNA upstream 11401 15100309 ~ 15105533 (-) True G155957
TU196477 lncRNA upstream 90143 15179051 ~ 15217634 (-) False G155989
TU196494 lncRNA upstream 115961 15204869 ~ 15212286 (-) True G156002
TU196476 lncRNA upstream 116408 15205316 ~ 15217634 (-) False G155989
TU196500 lncRNA upstream 118612 15207520 ~ 15298400 (-) False G156003
AMCG00006098 mRNA downstream 2633 15074200 ~ 15077768 (-) True AMCG00006098
AMCG00006097 mRNA downstream 19640 15050921 ~ 15060761 (-) True AMCG00006097
AMCG00006095 mRNA downstream 35910 15042183 ~ 15044491 (-) True AMCG00006095
AMCG00006103 mRNA downstream 48598 15030987 ~ 15031803 (-) True AMCG00006103
AMCG00006102 mRNA downstream 72422 14998500 ~ 15007979 (-) True AMCG00006102
AMCG00006094 mRNA upstream 9423 15098331 ~ 15103532 (-) True AMCG00006094
AMCG00006099 mRNA upstream 15424 15104332 ~ 15123328 (-) True AMCG00006099
AMCG00006101 mRNA upstream 72413 15161321 ~ 15181317 (-) True AMCG00006101
AMCG00006080 mRNA upstream 289314 15378222 ~ 15390581 (-) True AMCG00006080
AMCG00006081 mRNA upstream 308344 15397252 ~ 15400964 (-) True AMCG00006081
TU196327 other downstream 296395 14782631 ~ 14784006 (-) False AMCG00006043
TU196273 other downstream 397440 14679797 ~ 14682961 (-) True AMCG00006037
TU196220 other downstream 570787 14509233 ~ 14509614 (-) True G155770
TU196147 other downstream 739738 14336891 ~ 14340663 (-) True AMCG00006013
TU196074 other downstream 908794 14168090 ~ 14171607 (-) False AMCG00005997
TU196602 other upstream 344524 15433432 ~ 15436866 (-) True G156088
TU196604 other upstream 400494 15489402 ~ 15491642 (-) False G156088
TU196760 other upstream 865168 15954076 ~ 15957090 (-) True G156206
TU196870 other upstream 1365461 16454369 ~ 16462159 (-) False AMCG00006083
TU196884 other upstream 1416685 16505593 ~ 16518111 (-) False AMCG00006118

Expression Profile