RNA id: AMCG00006102


Basic Information

Item Value
RNA id AMCG00006102
length 1878
RNA type mRNA
GC content 0.53
exon number 15
gene id AMCG00006102
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14998500 ~ 15007979 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATGACCTTGTGGACACGGGGCCTGCTAGGCCCGGTTTCGTCCTGGCCGATTACGCCGTCTTCGCATTCATGCTTCTGATCTCGGTGGCCATCGGGATGTTCCAAGCTCTCCGAAAGGGGAGTCCGCACCAGACCACGGATGACTTCTTCACGGGGGGGAGGCAGATGTCAGCGGTGCCAGTGGGGCTCTCTTTGTGTGCCAGTTTCATGTCAGCAGTCCAGGTTCTGGGGGTGCCCACCGAAGCCTACCGCTACGGCCTGAAGTTCCTGTACATGTGTCTGGGGCAGACGTTCAACTCCCTGATTACCGCCTTCCTCTTCCTTCCTGTCTTCTACCGGCTTGGCATCACCAGCACCAATCAGTATCTGAAGATGAGGTTTAACAGGACCATGCAGCTGCTGGGGAGCTTCCAGTTCATCGTAGCCACATTACTATACACTGGAATAGTAATCTATGCCCCCGCCCTGATTCTGAACCAAGCTACTGGGCTTAATATGTGGGCCTCTCTCTTCTCTACTGGGCTCATTTGCACGTTCTACACCACTGTGGGTGGGATGAAAGCAGTGATCTGGACAGATGTGTTTCAGATCATTGTCATGCTCTCAGGGTTTGTGGCCATTTTAATCCATGGCACCATTTTGGTTGGCGGACCAGCAAAGGTTCTTGAACTCGCCAGCAACGGGTCCCGGGTGAATTTTAACGACTTTAAACTGGACCCAAGGAAGCGCTACACTTTTTGGAGCTTCACTGTGGGAGGAACGATGGTTTGGCTCTCCATGTATGCAGCAAACCAGGCCCAGGTGCAACGCTACATCGCCTGCAAGTcagagagagaagcacagtGGGCTCTGCTTGTGAACCAGGTTGGACTGTATCTCATTGTGGGTAGTGCCGGAATCTGTGGCATAGTCATGTTCGCGCTGTACGGCCACTGCGATCCTCTCTTGGTGGGCCGGATCTCCTCCCCTGATCAGtATATGCCTCATTTGGTGCTGGATATCTTTAAAGACTACCCTGGCTTCCCTGGTCTTTTCCTCGCATCCGCATACAGTGGAACCCTAAGcACTGCTTCCACCAGCATCAACGCCATGGCAGCTGTTACCATGGAGGACTTGCTGAAGCCCCGCTTGGCCACCGTGTCCCAGAAGAGACTGATGCTCATTTCGAAAGGCCTGTCTCTGATGTTTGGGGTCGGCTGCATCACGGTGGCCGCCCTCTCCTCCCTCTTAGATTCGGGTGTTCTACAAGGATCATTCACCGTTATGGGGGTGGTGAGTGGCCCACTACTGGGGGCTTTTATCCTGGGTATGTTTATCCCCGCTACTAACACAACGGGTGTGTTTGCTGGTGTACTGGTAGGGTTTGGGATTTCACTGTGGATCGCAGTAGGATCAACGTTATACCCTCCTGGCCCCGACACAATGGGAGTGTTGCCCAGCTATATGGACCAATGCCCCCCACTGACGCCTGCCAAGCTTGCATTCAACCACAGTCTAATTCTGGGCAAACGAGCACACCGGCAGCCTGTCTCAGGGGCACAGAGACAGTCTGGTCTTGAAGACTTCTATGCCATGTCTTACCTGTACTATGGAGCCCTTGGGACAACTGCAGTGGTGGTGGTTGGAGTTCTGGTCAGCTATATATCAGGACCAACCAAGAGGATAACCATTGCACCGGGGCTTCTCTTTTGGGACCTACATAAAAAGCCCACTGAAATCTCTTCAGAGGATAAAGTGAATTCCCACTCTCTCATTGTACCTCTGGGGCTCACAAAGAGCAGAAGAGGAAGTGAGGGACATAAAACTGAAGTGAAGCTACAAGATGGACTTGGACAGAACAGAGAGGATGCCTTGCTTCCCGAGATCCAGGCCTAG

Function

GO: NA

KEGG:

id description
K14385 SLC5A5, NIS; solute carrier family 5 (sodium/iodide cotransporter), member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196367 lncRNA downstream 16879 14980384 ~ 14981621 (-) True G155899
TU196366 lncRNA downstream 16879 14981103 ~ 14981621 (-) False G155899
TU196235 lncRNA downstream 428664 14569562 ~ 14569836 (-) True G155783
TU196218 lncRNA downstream 506571 14489290 ~ 14491929 (-) True G155768
TU196199 lncRNA downstream 573754 14422504 ~ 14424746 (-) True G155754
TU196434 lncRNA upstream 92330 15100309 ~ 15105533 (-) True G155957
TU196477 lncRNA upstream 171072 15179051 ~ 15217634 (-) False G155989
TU196494 lncRNA upstream 196890 15204869 ~ 15212286 (-) True G156002
TU196476 lncRNA upstream 197337 15205316 ~ 15217634 (-) False G155989
TU196500 lncRNA upstream 199541 15207520 ~ 15298400 (-) False G156003
AMCG00006096 mRNA downstream 6239 14981801 ~ 14992261 (-) True AMCG00006096
AMCG00006033 mRNA downstream 67115 14920403 ~ 14931385 (-) True AMCG00006033
AMCG00006032 mRNA downstream 91342 14889140 ~ 14907158 (-) True AMCG00006032
AMCG00006044 mRNA downstream 122779 14866709 ~ 14875721 (-) True AMCG00006044
AMCG00006046 mRNA downstream 137765 14852157 ~ 14860735 (-) True AMCG00006046
AMCG00006103 mRNA upstream 23008 15030987 ~ 15031803 (-) True AMCG00006103
AMCG00006095 mRNA upstream 34204 15042183 ~ 15044491 (-) True AMCG00006095
AMCG00006097 mRNA upstream 42942 15050921 ~ 15060761 (-) True AMCG00006097
AMCG00006098 mRNA upstream 66221 15074200 ~ 15077768 (-) True AMCG00006098
AMCG00006100 mRNA upstream 72422 15080401 ~ 15088908 (-) True AMCG00006100
TU196327 other downstream 214494 14782631 ~ 14784006 (-) False AMCG00006043
TU196273 other downstream 315539 14679797 ~ 14682961 (-) True AMCG00006037
TU196220 other downstream 488886 14509233 ~ 14509614 (-) True G155770
TU196147 other downstream 657837 14336891 ~ 14340663 (-) True AMCG00006013
TU196074 other downstream 826893 14168090 ~ 14171607 (-) False AMCG00005997
TU196602 other upstream 425453 15433432 ~ 15436866 (-) True G156088
TU196604 other upstream 481423 15489402 ~ 15491642 (-) False G156088
TU196760 other upstream 946097 15954076 ~ 15957090 (-) True G156206
TU196870 other upstream 1446390 16454369 ~ 16462159 (-) False AMCG00006083
TU196884 other upstream 1497614 16505593 ~ 16518111 (-) False AMCG00006118

Expression Profile