RNA id: TU196378


Basic Information

Item Value
RNA id TU196378
length 208
lncRNA type sense_over
GC content 0.54
exon number 3
gene id AMCG00006102
representative False

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14998500 ~ 15007979 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCATAGTCATGTTCGCGCTGTACGGCCACTGCGATCCTCTCTTGGTGGGCCGGATCTCCTCCCCTGATCAGtATATGCCTCATTTGGTGCTGGATATCTTTAAAGACTACCCTGGCTTCCCTGGTCTTTTCCTCGCATCCGCATACAGTGGAACCCTAAGcACTGCTTCCACCAGCATCAACGCCATGGCAGCTGTTACCATGGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196367 lncRNA downstream 20789 14980384 ~ 14981621 (-) True G155899
TU196366 lncRNA downstream 20789 14981103 ~ 14981621 (-) False G155899
TU196235 lncRNA downstream 432574 14569562 ~ 14569836 (-) True G155783
TU196218 lncRNA downstream 510481 14489290 ~ 14491929 (-) True G155768
TU196199 lncRNA downstream 577664 14422504 ~ 14424746 (-) True G155754
TU196434 lncRNA upstream 96118 15100309 ~ 15105533 (-) True G155957
TU196477 lncRNA upstream 174860 15179051 ~ 15217634 (-) False G155989
TU196494 lncRNA upstream 200678 15204869 ~ 15212286 (-) True G156002
TU196476 lncRNA upstream 201125 15205316 ~ 15217634 (-) False G155989
TU196500 lncRNA upstream 203329 15207520 ~ 15298400 (-) False G156003
AMCG00006096 mRNA downstream 10149 14981801 ~ 14992261 (-) True AMCG00006096
AMCG00006033 mRNA downstream 71025 14920403 ~ 14931385 (-) True AMCG00006033
AMCG00006032 mRNA downstream 95252 14889140 ~ 14907158 (-) True AMCG00006032
AMCG00006044 mRNA downstream 126689 14866709 ~ 14875721 (-) True AMCG00006044
AMCG00006046 mRNA downstream 141675 14852157 ~ 14860735 (-) True AMCG00006046
AMCG00006103 mRNA upstream 26796 15030987 ~ 15031803 (-) True AMCG00006103
AMCG00006095 mRNA upstream 37992 15042183 ~ 15044491 (-) True AMCG00006095
AMCG00006097 mRNA upstream 46730 15050921 ~ 15060761 (-) True AMCG00006097
AMCG00006098 mRNA upstream 70009 15074200 ~ 15077768 (-) True AMCG00006098
AMCG00006100 mRNA upstream 76210 15080401 ~ 15088908 (-) True AMCG00006100
TU196327 other downstream 218404 14782631 ~ 14784006 (-) False AMCG00006043
TU196273 other downstream 319449 14679797 ~ 14682961 (-) True AMCG00006037
TU196220 other downstream 492796 14509233 ~ 14509614 (-) True G155770
TU196147 other downstream 661747 14336891 ~ 14340663 (-) True AMCG00006013
TU196074 other downstream 830803 14168090 ~ 14171607 (-) False AMCG00005997
TU196602 other upstream 429241 15433432 ~ 15436866 (-) True G156088
TU196604 other upstream 485211 15489402 ~ 15491642 (-) False G156088
TU196760 other upstream 949885 15954076 ~ 15957090 (-) True G156206
TU196870 other upstream 1450178 16454369 ~ 16462159 (-) False AMCG00006083
TU196884 other upstream 1501402 16505593 ~ 16518111 (-) False AMCG00006118

Expression Profile