RNA id: TU196744


Basic Information

Item Value
RNA id TU196744
length 1376
lncRNA type sense_over
GC content 0.36
exon number 5
gene id AMCG00006111
representative False

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 16032892 ~ 16035969 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGAAGTCAGTCATACTGGTAGGGTTAGGCTGTAAATGTTGTGTTGGTGAGCTGGACGAAAATGATCGGCGATATTTTACTGTTTGGGACGTTGCTTATGAACGCAGGAGCAGTCCTCAATTTTAAGCTGAAGAAGAAAGATACCCAAGGATTTGGAGATGAGTCTCGAGGGCCCACTACAGGTGACAACATCCGAGAGTTTCTTCTGAGTCTGCGCTACTTCCGGATCTTTATCGCCTTATGGAATATCTTCATGATGTTTTGCATGATCTTGTTGTTTGGATCATAAGAATGAACGCTACAGAAGAAGAGGGTGTAGAAAAAGATCCACACACCGACCCACCACTtcaagacttaaaaaaaaaaaagaatatacaaATGAACATGTTTTGGTGTAGGGTTATTTGTCATAAGGGGGAAGAAAAGTTGTTGCATCTATTTGGTGGGAGATATcatgcaacattttaaatatattcaggaTTCTCAGACTGTTGAAACTTTTGATAgattttttcttcaataatgtgaagtatttttatttgtattttttgtacccCTTTTGCCCAATGAAGCCAATGCATGGATGATGCTGGGAAATCTGTAACAATGGCTGTTTGAGTGTAGCACAATAATCCTCCACTAGTTCTTTGTAGATGCCTTTTCAGAATGGTCTGTGTAATGGCTCAAGACAATTGGTTACAGTTGTTTCTTCATCCCTCCCTGAACTCTTCAAAATCTGACTCTAATCCTCCCATATACACAACAAAGAACATCAGCCCTATGCATTCCCCCTACAATGTCCCTGTCTCATGTATTACCCGATACAGTCTGACACAAATACAGACCATGTGCTGTGCTTTTCAGTACTTGCTGCggccaaaaacaaaatggtggaACGTGAACTGAATGGACCagctaataaaatacatatataacatagGTAGTTACATATCTGtgggttacattttgtatattttgttcattgtgtagtttttgtttcttccccAAACTTACCTTTCAACTTTTATTCTCtatttatatcaatataaagCTCTACATTTGGATTAATGAAAAGTGTCTCATTATTGTTCGTTATCTACAGTCAGCACTGTGGGGATACAGTGAGTTATACACATTTCCTATAGAAATGTTAACGTCGGGTGTAAATGAATAACACTATAGAAGTAGTTGTTTATCTAATGAGATATATAGTTTGGTGATTGATtctataaacatatatattgatcTAAGCAACTCCAAACCTTTGTTGTATACAGACAGTTTCTATCTGAGATTTCAATATTGAAGTGCTATTATTGATTGCAAACGtttgtctgtaaaataaacattgattgaaataaacacaaatagatgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196694 lncRNA upstream 199667 15833079 ~ 15833294 (+) True G156155
TU196665 lncRNA upstream 220850 15778199 ~ 15812111 (+) True G156130
TU196592 lncRNA upstream 427082 15561603 ~ 15605879 (+) True G156082
TU196547 lncRNA upstream 601022 15430476 ~ 15431939 (+) True G156042
TU196456 lncRNA upstream 845736 15185874 ~ 15187225 (+) True G155974
TU196847 lncRNA downstream 428039 16464008 ~ 16467676 (+) True G156279
TU196875 lncRNA downstream 468801 16504770 ~ 16505206 (+) True G156302
TU196896 lncRNA downstream 563563 16599532 ~ 16599858 (+) True G156321
TU196901 lncRNA downstream 589589 16625558 ~ 16627713 (+) True G156326
TU196904 lncRNA downstream 608478 16644447 ~ 16644849 (+) True G156329
AMCG00006107 mRNA upstream 44186 15964450 ~ 15988775 (+) True AMCG00006107
AMCG00006104 mRNA upstream 75861 15947208 ~ 15957100 (+) True AMCG00006104
AMCG00006105 mRNA upstream 106401 15924629 ~ 15926560 (+) True AMCG00006105
AMCG00006106 mRNA upstream 114370 15906189 ~ 15918591 (+) True AMCG00006106
AMCG00006074 mRNA upstream 266321 15753228 ~ 15766640 (+) True AMCG00006074
AMCG00006112 mRNA downstream 11807 16047776 ~ 16049824 (+) True AMCG00006112
AMCG00006113 mRNA downstream 18106 16054075 ~ 16066898 (+) True AMCG00006113
AMCG00006088 mRNA downstream 68412 16104381 ~ 16120903 (+) True AMCG00006088
AMCG00006089 mRNA downstream 87159 16123128 ~ 16145238 (+) True AMCG00006089
AMCG00006141 mRNA downstream 638817 16674786 ~ 16680552 (+) True AMCG00006141
TU196746 other upstream 59955 15964433 ~ 15973006 (+) False AMCG00006107
TU196591 other upstream 448200 15578084 ~ 15584761 (+) True AMCG00006065
TU196404 other upstream 925227 15107209 ~ 15107734 (+) True G155932
TU196402 other upstream 927394 15103456 ~ 15105567 (+) True AMCG00006092
TU196155 other upstream 1649381 14375995 ~ 14383580 (+) True AMCG00006009
TU196781 other downstream 18066 16054035 ~ 16059830 (+) False AMCG00006113
TU196796 other downstream 104575 16140544 ~ 16144623 (+) False AMCG00006089
TU196902 other downstream 591824 16627793 ~ 16629182 (+) True G156327
TU197026 other downstream 1087236 17123205 ~ 17127554 (+) False AMCG00006149
TU197282 other downstream 1937772 17973741 ~ 17980637 (+) False G156640

Expression Profile