RNA id: TU196781



Basic Information


Item Value
RNA id TU196781
length 579
RNA type TUCP
GC content 0.53
exon number 3
gene id AMCG00006113
representative False

Chromosome Information


Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 16054035 ~ 16066898 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCCCGTCTCTGCTGCCGGTGCTGTGACTCTGAATTGGAAGATGGCTGCGGTGGCTCGTCCACAAGTGAAGGAAGGAGTCCGGATTGCGCTGCTGTGCCTCTGCTGGTACTCCGTCAGCTCGGGGGGCAACGTCATCAATAAAATCATCCTGAATGGATTTCCCTACCCGGTCACCGTGTCGCTCTTCCACATTTTCTCCATCGTCATCTTCCTGCCGCCGCTCTTGCGGGCATGGGGAGTCCCTAAAACTGAATTACCCGGCAGATATTACCGCTGGTTCATCCTGCCTTTGGCTTTCGGGAAATACTTCGCATCAGTATCGGCTCACTTCAGTATCTGGAAGGTCCCGGTCTCCTATGCGCATACAGTCAAAGCCACCATGCCAATCTGGGTGGTGTTGTTGTCTCGCATCATCATGAAGGAGAAACAGACGACAAAGgtTTACACGTCTCTGGTCCCTATAATCGGAGGTGTGCTGCTAGCCACGGTGACAGAGCTGTCGTTTGACCTCTCTGGACTGATTAGTGCCCTGGCTGCAACCCTCTGCTTTTCTCTGCAGAACATCTTCTCCAAAAAGGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU196744 lncRNA upstream 18066 16032961 ~ 16035969 (+) False AMCG00006111
TU196694 lncRNA upstream 220741 15833079 ~ 15833294 (+) True G156155
TU196665 lncRNA upstream 241924 15778199 ~ 15812111 (+) True G156130
TU196592 lncRNA upstream 448156 15561603 ~ 15605879 (+) True G156082
TU196547 lncRNA upstream 622096 15430476 ~ 15431939 (+) True G156042
TU196847 lncRNA downstream 404178 16464008 ~ 16467676 (+) True G156279
TU196875 lncRNA downstream 444940 16504770 ~ 16505206 (+) True G156302
TU196896 lncRNA downstream 539702 16599532 ~ 16599858 (+) True G156321
TU196901 lncRNA downstream 565728 16625558 ~ 16627713 (+) True G156326
TU196904 lncRNA downstream 584617 16644447 ~ 16644849 (+) True G156329
AMCG00006112 mRNA upstream 4211 16047776 ~ 16049824 (+) True AMCG00006112
AMCG00006111 mRNA upstream 18077 16032892 ~ 16035958 (+) True AMCG00006111
AMCG00006107 mRNA upstream 65260 15964450 ~ 15988775 (+) True AMCG00006107
AMCG00006104 mRNA upstream 96935 15947208 ~ 15957100 (+) True AMCG00006104
AMCG00006105 mRNA upstream 127475 15924629 ~ 15926560 (+) True AMCG00006105
AMCG00006088 mRNA downstream 44551 16104381 ~ 16120903 (+) True AMCG00006088
AMCG00006089 mRNA downstream 63298 16123128 ~ 16145238 (+) True AMCG00006089
AMCG00006141 mRNA downstream 614956 16674786 ~ 16680552 (+) True AMCG00006141
AMCG00006148 mRNA downstream 631751 16691581 ~ 16696873 (+) True AMCG00006148
AMCG00006142 mRNA downstream 647778 16707608 ~ 16722360 (+) True AMCG00006142
TU196746 other upstream 81029 15964433 ~ 15973006 (+) False AMCG00006107
TU196591 other upstream 469274 15578084 ~ 15584761 (+) True AMCG00006065
TU196404 other upstream 946301 15107209 ~ 15107734 (+) True G155932
TU196402 other upstream 948468 15103456 ~ 15105567 (+) True AMCG00006092
TU196155 other upstream 1670455 14375995 ~ 14383580 (+) True AMCG00006009
TU196796 other downstream 80714 16140544 ~ 16144623 (+) False AMCG00006089
TU196902 other downstream 567963 16627793 ~ 16629182 (+) True G156327
TU197026 other downstream 1063375 17123205 ~ 17127554 (+) False AMCG00006149
TU197282 other downstream 1913911 17973741 ~ 17980637 (+) False G156640
TU197332 other downstream 2130394 18190224 ~ 18356589 (+) True AMCG00006138

Expression Profile