RNA id: AMCG00006114


Basic Information

Item Value
RNA id AMCG00006114
length 1747
RNA type mRNA
GC content 0.48
exon number 6
gene id AMCG00006114
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 16024475 ~ 16031177 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCTGGAGCTGCCAAGTAACACTTGATGCCGTCTGACAGCACAATTTATACAGCCGTGCAAAAAGCTATATTAATAGGGAGGCTCGGGTGAAATACTTTTTACTCGTGGAGACAGGGGTCTACGCAGTGGGTCCAGGACTGGGGGGTAGAGGACATTTtagaagacagaaaacaggactGGAAGACAGCTGCTCTGATCCACACGCATATTGAGATTTGTCTATTTGTGCACCATGGAAGTCCTAGCTGCTCTCAACCTGGGCGAAATAACCCAGTACTTTGCCAAAATGTCTATGTTTCCCATTTTTGATCTTGCCTATTACATCGTCTCCATACTGTACCTCAAGTATGAACCAGGCTCTGTGGAGGTGTCTCGCAGGAGTCCTGTGGCCTCCTGGCTCTGTGCCATGCTCTACTGCTTCGGGAGTTACATCCTAGCCGACATCATGCTCGGAGACTCCCCCATCGACTACTTCATCAAGCTTGTGCTGGTGGCCTTGAAGGAAGTGGTCAGAGTTCGTTCTGGTGTGGCTCTCATGTCCAACTTCGAGCAGCTGATCCGCGGAGTGTGGAGACCTGAGACCAATGAGATTGCCCATATGACATTCCCCACCAAAGCCAGCCTGTATGGAGCTATCCTGTTCACCCTCCAGGAGGCCCACTGGCTTCCAGTCTCAAAGAGCACCCTCATCTGTCTCTTCACCCTCTTCATGGCCACTGCGAAGGTGTTCATGACCGCCACCCACTCGCATGGTTCTCCATTCGCCCTGGTGGAATCGATGgtctgctctgtgctgttcGGCTCCCCAGCCGGAGGCGCGGACCACCACGACAGCCATGAATCCAGCCACCACCCCGCCCCTGCTGCTGCAGTCGCCCCGATGTCTCCTGCCAAGACCAAGGAGGAGCTCAACGAGGGAACCCGCAAGAGGAAGGCCAAAAAGGCAGAGTAGAGTCCTAGCATGGCGCAACAGAACCAGCCAACACAACAACCAAGATAGCGATGACAATAAcgacaacagcagcaacaactaTTGCCCTCCCAAGATATGCTGGCGGTGATCTCCCATGAACTGGGCTTCATGTTTCAAGAGTGTAATGGACTGTATCATTATGCCCTGTGTGGTAGGAGAGGGGGGTGGAGCTTTAGACGGTGTGATGACTCCTACATTTCCAGTTGTCGTAGTTGTAAACAGAAAGGGTCATAGTTTATTGTAAATAGGAAACAAAATTGAACAAATGGGGTCATACACTTCagacattttttcccccctgtgaTATCATTTATCAACTCCACCCCTCTTTTTGTCCCAAGATGGACTTGTCTGCCTGCAAGTGTTAAGACAAAACATTGTGGGTATTGCATGGTGCCACCCTATCTTGGGAGAGTAATACCTAGGTTTATTCCTCCTCGCATAAGAGACTAGAAAAGTCTTTTTTGGTTGCATTGCCATTGGAAGACAGGATCTTTGGACACAGTTGAAGGATCACTCACCTGGGCAGTACCACATGACTACTGAGACACTTGTCAGttactttgcatttattattattgctacaTATTTGATTTCCTCCTTTTCGAACCATTAAAACACATCCCAATTCCAGGTCCCAGTCCAAATTGGGCTTAACTGTGAacatgcaaagaaaaaacaaaaagcaggacTGGATTGTCTTGATTTCTTGTAAATGGATTCTTTTTCAATCCAATTCAGCCcctaaataaaactaacaaacatttttccaa

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0012505 endomembrane system cellular_component
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
K24013 TMEM38, TRIC; trimeric intracellular cation channel

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196762 lncRNA downstream 24436 15994787 ~ 16000039 (-) True G156207
TU196754 lncRNA downstream 76948 15947208 ~ 15947527 (-) True G156203
TU196640 lncRNA downstream 408688 15615562 ~ 15615787 (-) True G156113
TU196629 lncRNA downstream 439709 15581857 ~ 15584766 (-) True G156104
TU196599 lncRNA downstream 587609 15435124 ~ 15436866 (-) False G156088
TU196784 lncRNA upstream 31556 16062733 ~ 16063072 (-) True G156225
TU196787 lncRNA upstream 35492 16066669 ~ 16071528 (-) True G156228
TU196920 lncRNA upstream 620363 16651540 ~ 16671387 (-) True G156341
TU196921 lncRNA upstream 638624 16669801 ~ 16680772 (-) False G156341
TU196924 lncRNA upstream 643621 16674798 ~ 16676047 (-) True G156344
AMCG00006116 mRNA downstream 12131 16001553 ~ 16012344 (-) True AMCG00006116
AMCG00006087 mRNA downstream 147051 15840912 ~ 15877424 (-) True AMCG00006087
AMCG00006086 mRNA downstream 205619 15789347 ~ 15818856 (-) True AMCG00006086
AMCG00006085 mRNA downstream 240474 15778207 ~ 15784001 (-) True AMCG00006085
AMCG00006075 mRNA downstream 247967 15773678 ~ 15776508 (-) True AMCG00006075
AMCG00006115 mRNA upstream 42186 16073363 ~ 16075726 (-) True AMCG00006115
AMCG00006108 mRNA upstream 124129 16155306 ~ 16180536 (-) True AMCG00006108
AMCG00006109 mRNA upstream 159453 16190630 ~ 16208678 (-) True AMCG00006109
AMCG00006110 mRNA upstream 245909 16277086 ~ 16287328 (-) True AMCG00006110
AMCG00006083 mRNA upstream 423107 16454284 ~ 16462165 (-) True AMCG00006083
TU196760 other downstream 67385 15954076 ~ 15957090 (-) True G156206
TU196604 other downstream 532833 15489402 ~ 15491642 (-) False G156088
TU196602 other downstream 587609 15433432 ~ 15436866 (-) True G156088
TU196327 other downstream 1240469 14782631 ~ 14784006 (-) False AMCG00006043
TU196273 other downstream 1341514 14679797 ~ 14682961 (-) True AMCG00006037
TU196870 other upstream 423192 16454369 ~ 16462159 (-) False AMCG00006083
TU196884 other upstream 474416 16505593 ~ 16518111 (-) False AMCG00006118
TU196919 other upstream 638624 16669801 ~ 16671387 (-) False G156341
TU196984 other upstream 916820 16947997 ~ 16950117 (-) False AMCG00006127
TU197609 other upstream 3244023 19275200 ~ 19293820 (-) True G156907

Expression Profile