RNA id: TU196884


Basic Information

Item Value
RNA id TU196884
length 2577
RNA type TUCP
GC content 0.42
exon number 4
gene id AMCG00006118
representative False

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 16505364 ~ 16521689 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGCCACTGCCGAAGATCTCTTCAGCTACACACTGCCAAACCTGAAAACCTCAAGGGTTTGAAAAAGACACTTCCACACCCAAAGCATTTGCTATAATACAGAAGAGGCAGTAATCCGAacTCCCCAGGGAAAAGCGCTTCGCCTGTGGACTCCCCTCGACTGGCACCGAGGATATCCCTGGTGACCATGGTAACAGCCCAGCCCTGGGGTTCCCTGCGCTCCGAGTCTCTTTCTACGCCCCCCGGATCGCCAGTCACGCCTCTGGCTAAACGGATGGACAACAGTTTCGCTGCCAAGGGCCTGACTGAAACCCTGATGGGGGACTTTGAGGAATATCGCCTCAAACTGAAGCGGGACGAGAACGCATATGCTGGCATTCAGCCAAGTGATGACGTGAACAATGAGGTCGTGGAGGCTACGAGAGTGATCCGGCACAAGAACACGCGCGCCTTACGCTGGGAGGCGGGCATGTATGCCAACGAGGTGGCCGACTGAACGCATTTGGGGGACTATCGCCAGGTCTGATGCTGGCTCAACCTTGGGTGGGGCCGGAAAGGAGGGGAGCTGTTGATGTCCCAGCACAAGAAGAGAACTGGGCTGAAGAAGTTCTGATTCCCCACCACCCACCTCTACCTTGACTTTACCCCCCCACACCATTGCTCTCTAAAAAGTCCAGCCATTAGAATAATATGTTGTTACCATTGCTTTGTTCAATATTTGTTCTGTCTATTAAGGGTTAAATTTCAATACGTTTGGGGAacatttgctttctgtttccACAACGCTAAAGATTAGGCAGTCAGGCAGAGATCTGTTTCTTGCACTCTTGCATGAAAACCAGAGTGAACACGTCCATTGACCATAGTGATCACTTATATTCCAAGGGGTCAGTTCCCTACCTTCCTATGACCTTAGTCTTGTTGATGTAACAAAGTCAGAACAAGCTTGATCAAAATGAGAACTGGCAGTAGGAGCTCTGTTTTGCTACCATGTGGAACAAGACTGTGAAACTTTcatctttttgtgtgtatgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacggatgtatgtgtatgtatgtgtgtgttaggggTAAAGCAACCCGACAGCTAGCAAAAAGAGCTGTCAAATGAAGCAGAGAAGATGACAAATAACAAACCAAAAGGAGCTCGACATTGAAAAGCTGCAAATAATCACAGGGAAAGGGGCAGCAATAGGCTACTTAGAATGCATTGAATTTTGATGGAATCTGTTCTGTCCCAGTCAGCTCTTAGGATGAAAAGAAAGAACTGggatttttggttttgtttcattttacaatCTGCTGCCAGTTCAAAACAGTACTTTTTCAACACAGAGGACTGTAAACCTTGAACTACCCCACAGGCACAGACAATCTTGTAGGCTTTTATCTGTCTTGTAGACTTTTTAAGCCAAATACTAACACCAGTGAAACCTccatttgcttttaaagaaaaatggcaCTTGCAATACCGTGACGACTCAATGCTCTTGAAATCCCAGTGCTTCAAGTTAACGGACTTTTATTCCAGCGATTTCTATATGTTTTGAAGCAATAATAAGGAGGCTATGGACAGTTTTCAAATCTTTTCAGAGGTGATGCTTTTGATCACTCTTGTCAGCAGGTTTACAGAGCTACACTGATGGGTTGTCAGTGTTTAAATGGGCCAGATCTCTGTGTTTTGCAAGACAGACTGTCTTATCAGATAAGTTGGGCACGTAACAATATACCTGCCGTCATCACAAACtgacaaaacagacatttacactGGCTGGATCATTAAATACCGAAGATTAAGCACTGTCTCCCTCCCTAGAgatgtatacatataatttataaatatgtacaggATCTAAagaataatgtataatttgtttgtcAAATTGCCAGGaagttgttttgcttgtttattaGACTGCCTGAAATAACTGTGTGGAAGCATTGGATAATTAAATTGCAGAGTGTGGATGAAGGAGAAATTGTacttagattttttaaattatttttatttgatggtgtaagaaataatcataattgcTGATTAGGAATGCTTCAAGGGGTTTTGCGTATAGCATTTCCTTCTTAAACATGAAAGGGAAGATGGTGTTtcataaaaagttatttttagtaGGGTTTGGCATTTTCTGCTGTTCTGCAGGTTGCTATGGGTGCGGACGCATGGGTATGCTGGCCAAGTGTTGGTTGGAAAGTGGCTGTGAAAGAAAAACCTTTAAAGcatggaaagaaaacagaaaatgtgtatagAAAAGCAACAGAATAGACTTTTTGGCTTCTGTAGCATTTCAAGCATACGATGCACAGAAATAGTCTAGTTGGCAGACAGGTATGGTAGGAAAAGAATAATTGAGGAAAATCGCAGGCCCTAATTTGCaaggattttttaattattatttatttaattcatggaaattaaatatttcttttGTATAAcgtatatatagtatacataACCTTTGTTAGTCACAGAGACTGATTGTGTACACATATTCttgaattcaattaataaatatgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196787 lncRNA downstream 434065 16066669 ~ 16071528 (-) True G156228
TU196784 lncRNA downstream 442521 16062733 ~ 16063072 (-) True G156225
TU196762 lncRNA downstream 505554 15994787 ~ 16000039 (-) True G156207
TU196754 lncRNA downstream 558066 15947208 ~ 15947527 (-) True G156203
TU196640 lncRNA downstream 889806 15615562 ~ 15615787 (-) True G156113
TU196920 lncRNA upstream 133429 16651540 ~ 16671387 (-) True G156341
TU196921 lncRNA upstream 151690 16669801 ~ 16680772 (-) False G156341
TU196924 lncRNA upstream 156687 16674798 ~ 16676047 (-) True G156344
TU196965 lncRNA upstream 346987 16865098 ~ 16922863 (-) True G156378
TU197318 lncRNA upstream 1614218 18132329 ~ 18137505 (-) True G156668
AMCG00006119 mRNA downstream 5015 16498652 ~ 16500578 (-) True AMCG00006119
AMCG00006084 mRNA downstream 18366 16464012 ~ 16487227 (-) True AMCG00006084
AMCG00006083 mRNA downstream 43428 16454284 ~ 16462165 (-) True AMCG00006083
AMCG00006110 mRNA downstream 218265 16277086 ~ 16287328 (-) True AMCG00006110
AMCG00006109 mRNA downstream 296915 16190630 ~ 16208678 (-) True AMCG00006109
AMCG00006120 mRNA upstream 10111 16528222 ~ 16566157 (-) True AMCG00006120
AMCG00006117 mRNA upstream 109862 16627973 ~ 16637966 (-) True AMCG00006117
AMCG00006146 mRNA upstream 129911 16648022 ~ 16660916 (-) True AMCG00006146
AMCG00006147 mRNA upstream 142841 16660952 ~ 16681468 (-) True AMCG00006147
AMCG00006144 mRNA upstream 176601 16694712 ~ 16703925 (-) True AMCG00006144
TU196870 other downstream 43434 16454369 ~ 16462159 (-) False AMCG00006083
TU196760 other downstream 548503 15954076 ~ 15957090 (-) True G156206
TU196604 other downstream 1013951 15489402 ~ 15491642 (-) False G156088
TU196602 other downstream 1068727 15433432 ~ 15436866 (-) True G156088
TU196327 other downstream 1721587 14782631 ~ 14784006 (-) False AMCG00006043
TU196919 other upstream 151690 16669801 ~ 16671387 (-) False G156341
TU196984 other upstream 429886 16947997 ~ 16950117 (-) False AMCG00006127
TU197609 other upstream 2757089 19275200 ~ 19293820 (-) True G156907
TU197648 other upstream 2930820 19448931 ~ 19451861 (-) False AMCG00006201
TU197805 other upstream 4191688 20709799 ~ 20712216 (-) True G157059

Expression Profile