RNA id: AMCG00006119


Basic Information

Item Value
RNA id AMCG00006119
length 1212
RNA type mRNA
GC content 0.61
exon number 3
gene id AMCG00006119
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 16498652 ~ 16500578 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGTGGCTTTCTGACCTTGGTGGAGCCTGTGGTCATCATCAACACGGTGGGCAGCTCTTTCTACGATGCGGCTCTGACGCTGGCGGTCTACAACAGCAGCATGGAGACGGCGCAGGGCCAGAGTGACCGGGCGCAAACTCTCTCCTCCCGCTTCTTCCTCATCTACGGCTCCTTGACTTCCCTCCTGTCCCTGGTCTCCACCGTGCCCCTCGGCCGACTGGCAGATCGCCGGGGGCAGCGGGTGTTATTGGTGGTGCCCCAGGTGGGCTCCATCCTCAGCAAGTCCTTCCTGCTCCTTTTCCTGCTCTTCCGGCTGCCTCTCTGGGTGTTACACCTGGGCTCGGCCCTGCACGGCCTCAGCGGAGGCTCCCCGGCCTACTGGGGCGGAGTGGTGTCAGTGGCGGCGCTGCGGTCTGAGAGGCGGGTGCGGAGTTTGCGTCTGAACACGGTGGAGTTTTTCAGCGGTGTGGCGGGGGTTGCCGGGGGACTGATGTCGGGTTACATCTACCGGATTGGCCAATCTGGCGTTGCTCTAAGCGCTACAGGTTTGCTAGTGTGCGCCACTGGGCTCCTTTACTCTGCGTTTCTCCTCCGGTACCCTCAGCCTTCGAGCGCCGAGGAGCCAGGCGGGAATGGGATCTTGGCAGACTATACTGAGGCGGGGAGGATAGACTTGGGTGCCGTGGCTCTCCTATTCAGCGCCATGATCCTGTTCGTGCTGGGCATGTGTGGCGCCGAGAACGTGCTGTGCCTCTACGTGCtgaagcctcccctctcctgggaCTCGGTGTGGGCTGGCTACGGGCGGGCCGCTACCAATGCCATGTACCTGAGCAGCTTCCTGGGCGTACTGGCGCTCTCCCAGTGGCTCAGTGACCCCGCCCTCATCCTCCTGGGCATCGTCTCCAATTGCACTGGCATGGCCGTCCTGGCGTTCGCCCAACAAAGTTGGGTCTACTTCTTGGCACGTGGCATCATGATGTTTGCCTGTATCCCGATGCCCACCATCAAATCCCAGCTCTCCAAGATCTTGGATGCACAATTGTATGGGCGTGTGTTtggttggctgcagtcgagtcTGGCTCTGACTGACGTTGTGTCCACGGTCCTCTTCACCTCGATCTACCCTTTCACCCTGGACTCGTTCAGCGGCTTTTGCTTCCTGCTGTCCTGCATCATCAGTTACCTGAGTGCCGTGCCCATTCTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196787 lncRNA downstream 427124 16066669 ~ 16071528 (-) True G156228
TU196784 lncRNA downstream 435580 16062733 ~ 16063072 (-) True G156225
TU196762 lncRNA downstream 498613 15994787 ~ 16000039 (-) True G156207
TU196754 lncRNA downstream 551125 15947208 ~ 15947527 (-) True G156203
TU196640 lncRNA downstream 882865 15615562 ~ 15615787 (-) True G156113
TU196920 lncRNA upstream 150962 16651540 ~ 16671387 (-) True G156341
TU196921 lncRNA upstream 169223 16669801 ~ 16680772 (-) False G156341
TU196924 lncRNA upstream 174220 16674798 ~ 16676047 (-) True G156344
TU196965 lncRNA upstream 364520 16865098 ~ 16922863 (-) True G156378
TU197318 lncRNA upstream 1631751 18132329 ~ 18137505 (-) True G156668
AMCG00006084 mRNA downstream 11425 16464012 ~ 16487227 (-) True AMCG00006084
AMCG00006083 mRNA downstream 36487 16454284 ~ 16462165 (-) True AMCG00006083
AMCG00006110 mRNA downstream 211324 16277086 ~ 16287328 (-) True AMCG00006110
AMCG00006109 mRNA downstream 289974 16190630 ~ 16208678 (-) True AMCG00006109
AMCG00006108 mRNA downstream 318116 16155306 ~ 16180536 (-) True AMCG00006108
AMCG00006118 mRNA upstream 4786 16505364 ~ 16521689 (-) True AMCG00006118
AMCG00006120 mRNA upstream 27644 16528222 ~ 16566157 (-) True AMCG00006120
AMCG00006117 mRNA upstream 127395 16627973 ~ 16637966 (-) True AMCG00006117
AMCG00006146 mRNA upstream 147444 16648022 ~ 16660916 (-) True AMCG00006146
AMCG00006147 mRNA upstream 160374 16660952 ~ 16681468 (-) True AMCG00006147
TU196870 other downstream 36493 16454369 ~ 16462159 (-) False AMCG00006083
TU196760 other downstream 541562 15954076 ~ 15957090 (-) True G156206
TU196604 other downstream 1007010 15489402 ~ 15491642 (-) False G156088
TU196602 other downstream 1061786 15433432 ~ 15436866 (-) True G156088
TU196327 other downstream 1714646 14782631 ~ 14784006 (-) False AMCG00006043
TU196884 other upstream 5015 16505593 ~ 16518111 (-) False AMCG00006118
TU196919 other upstream 169223 16669801 ~ 16671387 (-) False G156341
TU196984 other upstream 447419 16947997 ~ 16950117 (-) False AMCG00006127
TU197609 other upstream 2774622 19275200 ~ 19293820 (-) True G156907
TU197648 other upstream 2948353 19448931 ~ 19451861 (-) False AMCG00006201

Expression Profile