RNA id: AMCG00006120


Basic Information

Item Value
RNA id AMCG00006120
length 5822
RNA type mRNA
GC content 0.40
exon number 8
gene id AMCG00006120
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 16528222 ~ 16566157 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGAGGCGTTGACACAGCAGGAGAGACTCCAAGCTATAGCGGAGAAAAGGAAGAGGCAGACAGAGATTGAGAACAAAAGGAGGCAGCTTGAGGATGACCGCAGACAGCTCCAGCACCTCAAGTCAAAGGCTCTGAGGGAGCGATGGCTGTTGGATGGTGCACCCTCTGCTGGCTCTGAGGAGGATGAAGCCAAGAAGCAACTTACTGAGGACGAGGCCAAGACCAAGGGCCTGGAGGAGGCCATTCTGAGactggagcaggagctggaggagtTGGAGACAGGCGTGTCTGCAACTTCGACCAAAGAGAACCTATCGGAGGCCGCCAAAGAAGAGGAGGGGAAGGCCGGAGACAACCCAGAGAAGGCTCCCTCAGGCTCTGCGAAAGAGGTCAAAGTTCACAACAGCCCTCGTCTGGACAAGTCCGGAGGTGCCTCAGGTATGATGAAAGCAGCCATGTACTCAGTAGAGATCACCATCGAAAAGGACAGACTCACAGGGGAGACAAAAGTGCTGTCTACCAACACCCTGCTGCCCAAAGACCTCTCGCACCAAGGGGTCAAAGTCTATGAGGATGACCAGAAAGTGGTTCACGAGGTGCGTGGGGTGGATGGAGCCTTGGAGAACGGGGTTCATCTTCTGAGCTCTTCAGAAGTGGACGAGCTCATTCACAAGGCTGACGAGGCCTCCATGGGCGAGGGAACCCCTAAGACAGGGAAACCTGCCGAGGCCCAAGAGCAGACCCCCAAGAAGGAGATCACTGGCATGGAAGCCAAGCCCACTGACAGCCCCCAGACAGCGGAGGGAGAAGCCACAGAGGATCGCCCCGTTACCATGGTCTTCATGGGTTACCAGAACGTGGAAGATGTGAGTGAGACCAAGAAGGTGCTGGGTCTGGAGGGCACAGTGAAGGCCGAGCTGGTGGTCATTGAGGATGGGGAGAGCAAAGGAGGCGCCGACGGGGCCAAGCAGGAGCAGGCGCCCCCCAACGGGAGTGCGGCGGATCCCTTGAAAAGCCAGGAGGGTGGGGAGAAGGCAGCCGAGGCTGAAGCCGGAGCAGGAGACGTCAACACAAAGGAGAAACAGCCCTGCAAGTGCTGCTCAGTCATGTGAGCCTAGCCCTCAAACGAGGACTTGACTTTTcgagtaaaaaacaaacaaaaaaaaacaaaaaaatacattctgttcTGTACCTTTTGAGCGACTGTTTTTCCccaatgtttttagtttttgttttgttttttgtttttatcacattttgttattttaaatagttttatttttggggggtggggggcatttGCATCTTTACGATTAGTACTAAAACAAACTGTCAAAGTCAATCAGTTGGTTCAGCACTGAGTTATCTGGGGTTGATTTCTCCAAAATAGGGGGAAGGAGGTGGAATTATCCCCTATCCGTCTTGTGCTGAAGTTATTCAGTGTCATCCTGAATGCATAAATCTATCAAACTAAACACAACATCTCATATACACTGTCATTGATTTTGTAGTCTTACATTTCCCGTATGAAGGACACAGATGCGTATATCaatctatatattaaaataataaaaataagaaacatttattttttaaatatatttattaggcttttttttaagctttacaTATTCGTCACTGCAAATACAGATGCATCTGATTAACTCTGTGTTATGCCAATATTTTTGGTTTGAAGTAAAaagacatgatttaaaaaaaaataagacaaccttaataaggaaaatatcttttaaaatatgaaaaatatgaagaaagtAACATGAGAATCTTTTTCTATTGATTTCAAGAATgcttgaaagaaagaaaagcataatgCCAAAATTGACCAATTATCAGTATAGGAGTGAGGTTGCAAACAAAGTGCcagttatacatttgtataataatattaaaacagctCGCGATgtaaaaaagcaattttcatcttgaaaaaactaaatggcaAAGGCacttgaattattaaaataaatcccctCGAACAAAGTCAGAATGGAAATAGACCTAAAAGGTTACAATATTTAACTACCTGACTacttcaaaataacatttattttccattgtttatgtttttatttatttgtttactgttGAAACATCAATATTGTTTATTCGCTGTGCCATCAAGTGTCTAGATCGGAATTAAaccaacatgttttttgttttttgtttttctttctgggaATTGATATGTACTCTCCCATTatcacattaatattaattatactgCTACTTTTAATCATTTGAATGAATTCAGATACCTCTGTCTCTCATACCGGAGTTTGAGGCTCATTAAATAAATGCCATTGTGTAAACAGCCAAGTTTGCCTGATTCATTTTATGAGGCTTTATCCCTGGAAGAAAAACTAAGCCTTGGATAAATGGATGTTGGCTGgtgccattttaaaaacaaggaccacagcaatttgtatttattccagtGATGCAAACACCTACTTAGACAGAGCAATGGTTAATGTTTTTgatccaaaaaagaaaataaaaataggtttattttttcttattttgggtatacttctaaaaatgtatttttattttttgtaatctttATGTAAATTGCCCTTTGAAGTCTGAAAGCATATTTTGATGTTTATAACGGTGCTGTCCAGATCGTATTACTAATGTCTTGCTGTTTGGCTTCATTCTAGATTCtcgatttttttgtttatgtgtctgttttgttttttttttaacatggtgATTTTCAGTTTGAGAGTGATCCTTAGTATTCACAATCCTTTGGGAGATTAATGATCAGAACAATGTTGTCTTTCACTTCTTGACCTGCCGAAACCTAGTTCACCAtttctgcacacacagacacggtttcaaaaacacagcaaatgaCACAGCAGGTGTTTATGAATACAGATAATATTGGTCTGCATCCTGGtggtttttaatgtgtgtaaagGTGTAAAGCTAGAGCGAAACTCGGGAGCATCCTGACATTCAAGGAATTTATGAGAAATTATTTTTCCCATGATACTCCTTTTATTcttagcttttttttccccccaaatacACTGCTAATGCTTTGAAGCTAACATTAaacaactgtttttttattttattttctgttgttctgtttttgtttctcctttatttccttttagatttgtttatttctttgtttgtttttggagcACATTTACATATCAGCAAATAGGAAACGTGGAAGTGAGCGCTAATGAAGTGAAGCCACACGAACACCAAGcccatttaaatagttttccttttaaGAGTTGTTACGATCCTACGCTGAAAGCTTATGTGCAACTTATCTAGGAATAAATTGAAtctgtttttcaaaattaactgAATATGGCATTAGGCTGGACTCACTAAAGTCATTTGTGgtgaatctgtttttatttcaaagtctGACAGGCAGTGACCGTGAGCCTGTCTATAGTTCTTCTGAAATGTTGTAACAGACTCTATGCAAGTATTCAGGTATAAAACAACCACCACCCCCTATCCACCTCTATGCAGAACTGGACCACTTTCTGCaacttgtttttctgtcacCCTGCACAACCGCAACCCTGTGAACAACTGTGAAGTCTGCTCCTTTTGTTGTGTACTTCTTCAATCACAACAAAGCATGCTGTATCTGAAACAGCCGTCAACTgggtcctgctgttttttttttgagttGTGTTCGTGTACAGTGTCTTACCAATAGAGCAGTTTGTGCATTTTACTCCCAGGCAAAGGACTGTAcggtgtgtttgtttcctcttGAGACCTTACAGTTACATTAGTGAAATGATCCCACAGAGCAAGGGACATTTTTCTGAAGGGGTTGTCGGCTTCATCTTAAACGTTGGCAggttttacaatttaattaaatttttaatGTAAGTGTCATCTGTTGGGGGTATGCATCCAATGGTTTGTCACGATAAGTAAAATTAagtttgaaggaaaaaaagtataaatgcatttaacatcTTGGCTTTTCAGTGTGGGGTAGTCCTGTTCCCCATGGATTCTAGCTCCCATTGAATACCTGTTTAAAATCTGGAGGTTTAAGTCATAAACCAGCAGAAGTAACTATGATCTGGGCTCCATTTATTGTCAAACTAATTCCCCACACTGCTCCAACAAAAGTtgtgcagaaacaaaatacttttttcactgagtgggaaaattaaagcaaacaaaacagaaggcAACTTTGAATGACATCAAAGGTTTTACAGGCAGTGACCCAAACTAACCTTTGTTTTTGAAGATGTCTATTATGTGTGTGGGGCCTTTTCAGGTCTTATTTTAATGGTGGTCAAATATTGGCCTACACAATTATTTCCAATGTTGGCAACTCATATAAACATCCCTTTAAACAGGGTCTGTAATTGAATGAATGGTCTGTTAATCAAATGGTGAACAACCTTTTTGTCAATTGTGACTTCCTGTCCAGGCAAAACAAAGCTGTGCAGACCCAGGACTTCTTAAAAAACACTCACTCAATTCTTCTGAGTCCCAtccaaaccccccccccaacacccacTGCCTTGTGAggttttgtaaaatgaattgCTTGGGGATAATTCATGACTTCAGCTACAGAACAGTTGTCATTTGTACAAAATTCTCTCCCTGGGTAGTAGGTGGCAGATACTTCGGATGTTGTGAATTAAAAGtagattaaaatgtcattagGACCCACTAAACACAGTCTAAAACAGAGGTGAATTGTGAAGAATGCCTTTTCAATTATACTTGCTTGTTTGGGTTTCcgtttctttccttccttcttctTTGCAAGGTGCTAACTGACACAGGATAGCTGCTGTGATTCAGTGCAAAGTGCCAAATCACACTTGCACAGTCCCGTTGTGGCTTCTCCCAGAAACATCAATGTGCATAACTGGACAACCATGCTCTTCTTGTTCATTAAAACCAGACAGAAGCCATTTTTGTTGTCGGAAGCTTTAACAAGCAAATCTGATTCAGCTTTGGTGGCATTACACTAGAATTAAATCATGTCTTAACATCAGATTACACTGCTTTTAATTTGGAGTTCCTTCTAAACTAAGGATTATATgtgaggaaaaaactaaatctataGTGACATCTGAGTCACGAATGCAACCCGTTCTACTTTCTACAAAACGTTTAATTTCTAAATTGGCAGAAAGAATGGAAACGGAGTAACATGATGTTTCCTGCCAGTGTCTCTGTCCTTCATACAGCCCAATGACATTAATGGCACTGTTCTCCACAGTAATGGACACTCTCTTCGCGTTGTGCACTTGTGACTCTTTAATCATAATGGAAAGGAACCATTACGCTGTACATAATGTGATCGTTTCTAATCAACTTCTACATCAAGATTCTCCATGTGCCCCTAGGGTGTAATTATCCATCCTGGGGAGAGAGTGAAAATAACAGTCATAGATGGCGAAGACACAGATGCCTATTGAGCTTTTAACATGTATAAAAACGAGTCTTAATTAGAGATCCTGTTGGACTCCCTTCTAATTAGCTATCGGATGCCAAGCACAGGGCTTCCTGTCTGGAGGGCAACCTTTGCTAAACTATGGAGATGTTGGCTTATCAAAAACACAGAGGAAAGGAGTTCAATTActgtttttaaaccttttctGAAGTCCTCCCTTCTCCAGACATCTTTCTCTGATTTTGAAGAATATGAGGATAAAATGAAAGCCTTAATTAAGACAGTTATTGAAGTTtgaattaatttttttctcatgaAAGATCAATTATGGTCAAGCAACTtccctctccacacacacacacacacacacac

Function

GO: NA

KEGG:

id description
K16519 AKAP2; A-kinase anchor protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196787 lncRNA downstream 456694 16066669 ~ 16071528 (-) True G156228
TU196784 lncRNA downstream 465150 16062733 ~ 16063072 (-) True G156225
TU196762 lncRNA downstream 528183 15994787 ~ 16000039 (-) True G156207
TU196754 lncRNA downstream 580695 15947208 ~ 15947527 (-) True G156203
TU196640 lncRNA downstream 912435 15615562 ~ 15615787 (-) True G156113
TU196920 lncRNA upstream 85383 16651540 ~ 16671387 (-) True G156341
TU196921 lncRNA upstream 103644 16669801 ~ 16680772 (-) False G156341
TU196924 lncRNA upstream 108641 16674798 ~ 16676047 (-) True G156344
TU196965 lncRNA upstream 298941 16865098 ~ 16922863 (-) True G156378
TU197318 lncRNA upstream 1566172 18132329 ~ 18137505 (-) True G156668
AMCG00006118 mRNA downstream 6533 16505364 ~ 16521689 (-) True AMCG00006118
AMCG00006119 mRNA downstream 27644 16498652 ~ 16500578 (-) True AMCG00006119
AMCG00006084 mRNA downstream 40995 16464012 ~ 16487227 (-) True AMCG00006084
AMCG00006083 mRNA downstream 66057 16454284 ~ 16462165 (-) True AMCG00006083
AMCG00006110 mRNA downstream 240894 16277086 ~ 16287328 (-) True AMCG00006110
AMCG00006117 mRNA upstream 61816 16627973 ~ 16637966 (-) True AMCG00006117
AMCG00006146 mRNA upstream 81865 16648022 ~ 16660916 (-) True AMCG00006146
AMCG00006147 mRNA upstream 94795 16660952 ~ 16681468 (-) True AMCG00006147
AMCG00006144 mRNA upstream 128555 16694712 ~ 16703925 (-) True AMCG00006144
AMCG00006145 mRNA upstream 156053 16722210 ~ 16749395 (-) True AMCG00006145
TU196884 other downstream 10111 16505593 ~ 16518111 (-) False AMCG00006118
TU196870 other downstream 66063 16454369 ~ 16462159 (-) False AMCG00006083
TU196760 other downstream 571132 15954076 ~ 15957090 (-) True G156206
TU196604 other downstream 1036580 15489402 ~ 15491642 (-) False G156088
TU196602 other downstream 1091356 15433432 ~ 15436866 (-) True G156088
TU196919 other upstream 103644 16669801 ~ 16671387 (-) False G156341
TU196984 other upstream 381840 16947997 ~ 16950117 (-) False AMCG00006127
TU197609 other upstream 2709043 19275200 ~ 19293820 (-) True G156907
TU197648 other upstream 2882774 19448931 ~ 19451861 (-) False AMCG00006201
TU197805 other upstream 4143642 20709799 ~ 20712216 (-) True G157059

Expression Profile