RNA id: AMCG00006121


Basic Information

Item Value
RNA id AMCG00006121
length 1038
RNA type mRNA
GC content 0.58
exon number 8
gene id AMCG00006121
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 17187308 ~ 17225885 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATGCCCCCGAATTTCAGGAAAGCTTTGTGACTTCAGGAGTTTTTAATGTAACAGAATTGGTGCAAGTCTCCAGAACTCCGGTGGTGACGGGCACCGGCCCCAACTTCTCCCTGGGGGAGCTGCAGGGGCACCTGGCCTACGATCTGAACCCCTCTGGAGCTGGCATGAGGAGGACGCTGCCCAGTACTTCGTCCAGTGGGAGTAAAAGGCACAAATCGGGCTCCATGGAAGATGACATTGACACTAGCCCTAGTGGGGAGTTCTACACCTCGCCCAACTCCCCAGCCAGCAGCAGCCGAAACTGGCAGGAAGAGATTGAAGGGGGTATCTCTCCCACAGTGAAGAAGACAGAGATGGACAAATCTCCATTCAGTAGCCCCTCCCCCCAGGACAGCTCACCACGGCTCACCAGTTTCACCCAGCACCACCGGCCCGTCATCGCAGTGCACAGCGGCATCTCCAGGAGTCCACACCCCTCATCATCTCTGCACTTCCCCACGACCTCCATCCTGCCCCAGACAGCCTCCACCTACTTCCCCCACACGGCCATCCGCTACCCCCCACACCTCGGCACGCAGGACCCCCTCAAGGATCTCGTCTCTCTCGCCTGTGACCCATCCAATCAACAGCCTGGACCGCTGAACGGCAGTGGTCAAGTGAAGGTGCCCAGCCACTACATTTCCTCGCAGATGCTGGCCCCACCGCCTCCCCCTGGCATGTCCCGACTGACGTTACCACCCGACTCCAAATCCGCTACAACTACCACGGATGGAGGAGCCAATTCTCCCACGTCACCCACGTACTCAGCCCCGGGGACGCCCCCTGCCAACCGTTCCTTTGTGGGAATAGGACCTCGGGACCCTGGGAGCCTCTATCAGGCACAGGTAGGTCCTCCACCTTCTCCCTGTCTGTGTGACTTACACTTCACTTACAGGGAAGAGTCAAACATCTGTCAAGATGGGAGCTCTGAATGGGTCACCCTGCAGAAGACAGGCAGTAAGACTAGTTCGAACCCCTTTGTGGGTATAATTTAA

Function

GO: NA

KEGG:

id description
K09170 NFIC; nuclear factor I/C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196965 lncRNA downstream 264445 16865098 ~ 16922863 (-) True G156378
TU196921 lncRNA downstream 506536 16669801 ~ 16680772 (-) False G156341
TU196924 lncRNA downstream 511261 16674798 ~ 16676047 (-) True G156344
TU196920 lncRNA downstream 515921 16651540 ~ 16671387 (-) True G156341
TU196787 lncRNA downstream 1115780 16066669 ~ 16071528 (-) True G156228
TU197318 lncRNA upstream 906444 18132329 ~ 18137505 (-) True G156668
TU197320 lncRNA upstream 912634 18138519 ~ 18144775 (-) True G156670
TU197358 lncRNA upstream 1207721 18433606 ~ 18434245 (-) True G156696
TU197382 lncRNA upstream 1306177 18532062 ~ 18532447 (-) True G156716
TU197383 lncRNA upstream 1307298 18533183 ~ 18538243 (-) True G156717
AMCG00006152 mRNA downstream 92660 17083964 ~ 17094648 (-) True AMCG00006152
AMCG00006153 mRNA downstream 135556 17036827 ~ 17051752 (-) True AMCG00006153
AMCG00006133 mRNA downstream 158930 17023028 ~ 17028378 (-) True AMCG00006133
AMCG00006131 mRNA downstream 164714 17022269 ~ 17022594 (-) True AMCG00006131
AMCG00006132 mRNA downstream 179034 16980545 ~ 17008274 (-) True AMCG00006132
AMCG00006122 mRNA upstream 47900 17273785 ~ 17281599 (-) True AMCG00006122
AMCG00006123 mRNA upstream 198953 17424838 ~ 17442831 (-) True AMCG00006123
AMCG00006124 mRNA upstream 224688 17450573 ~ 17468843 (-) True AMCG00006124
AMCG00006137 mRNA upstream 295939 17521824 ~ 17523344 (-) True AMCG00006137
AMCG00006157 mRNA upstream 318621 17544506 ~ 17558968 (-) True AMCG00006157
TU196984 other downstream 237191 16947997 ~ 16950117 (-) False AMCG00006127
TU196919 other downstream 515921 16669801 ~ 16671387 (-) False G156341
TU196884 other downstream 669197 16505593 ~ 16518111 (-) False AMCG00006118
TU196870 other downstream 725149 16454369 ~ 16462159 (-) False AMCG00006083
TU196760 other downstream 1230218 15954076 ~ 15957090 (-) True G156206
TU197609 other upstream 2049315 19275200 ~ 19293820 (-) True G156907
TU197648 other upstream 2223046 19448931 ~ 19451861 (-) False AMCG00006201
TU197805 other upstream 3483914 20709799 ~ 20712216 (-) True G157059

Expression Profile