RNA id: AMCG00006124


Basic Information

Item Value
RNA id AMCG00006124
length 2158
RNA type mRNA
GC content 0.44
exon number 10
gene id AMCG00006124
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 17450573 ~ 17468843 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAACCGATAAAGTCCAGGGCGCCGCAGCTGCATTTGGAGTACAGATTTTACAAACAGCTGGGAAGTTCAGAGGGCATTCCTCAGGTGTACTACTTTGGCCCATGTGGGAAATACAATGCCATGGTCCTGGAGCTCCTGGGGCCCAGCCTGGAGGATCTCTTTGATATCTGCGACAGAACCTTCTCCCTCAAGACTGTCCTGATGATAGCCATACAGTTGATCACGCGGATGGAGTATGTACATACCAAAAGCTTGATATACAGAGATGTCAAGCCGGAAAATTTCCTGGTGGGTAGGCCAGGCAGCAAACGGCAGCACACAATCCACATCATCGACTTCGGCCTGGCCAAAGAATACATCGACCCCGAGACCAAAAAACACATCCCCTACCGGGAGCACAAAAGCCTGACGGGCACTGCACGATATATGAGCATTAACACGCACCTGGGGAAAGAACAAAGCAGGAGGGATGACCTGGAAGCCTTGGGACACATGTTCATGTACTTTCTTCGAGGCAGCCTCCCCTGGCAGGGCTTGAAGGCTGATACATTGAAGGAGAGGTATCAGAAAATTGGAGATACTAAACGAGCGACGCCAGTTGAAGTGCTATGTGAAACCTTTCCAGAGGAAATGGCCACGTATCTGCGCTATGTGAGGAGGCTGGACTTCTTCGAAAAACCAGACTATGACTACTTAAGGAAACTCTTCACTGACCTCTTTGACAGGAACGGCTATGTTTTCGATTACGAATATGACTGGGTTGGGAAGACGCTTCCCACCCCCATCGGCCCTGTCCACAGTGACAACCCCCTGCCGCCTAGCAGCAGAGACAAAGCACAACAACAGACCAAAAACCAGTCGCCTGAGCTCAAAGGAACCTGTGAGTCCCAGCCCACTCCAGTGACCAATAGGGAGCTCCTGGGGTCTCATCTCACAGCTGATAGGCTCGGGGGCTCTGTTCAGGTAATGAGCTCGACAAACGGGGAGCTGAACACTGATGACCCTACTGCAGGACACTCCAATGCTCCCATCACAGCGCCGGCCGAAGTGGAAgtgCTGCTGTTTCTtcaagaggaggaagaggaaagcTCTTCAACGGCACAAGTGAAGGGGAGATCCCATGAGAACTGATACACTCTGGTCACTGTCGAGTTTTAAATGGACGCAAATGCAAAACCCATCTCACGTTGGCAGACGCACCTCAGTTGTGTGCAAAGGAACGTTACTTTCACTCTCGCCAAGTGGGAATATGGACTTCTggttcctttttaaaaaaaaatatatatatatgaaaaaaattaaaataactaaacaaataccGGACACAAAATACCTACATGAAAAGATGCTGTTTCTACATTGCTGTATTCTAGAATCCACACACAAAGCATTAACTGTACACACCCCCATTGactggtggaaaaaaaaaaaaaaatcttctccaTAGAACTAGTTCTAATTGTGGGAtcaaagcaagaaagaaaatgtactaATGACAACCCAAAAATCACTGCGAGGAAAGCACGAACTTCATCTGCATCAGAGTCGGACGATTTTATGTAAAttcttttcccttttatttttttctaatttaaatttatgTTGTTAAAGGTCGACTCTCTGAGTTGGAATGAACTTTTACTTTCATGTGTAGTGTtctggaattcatttttttttttctgtcaatgTGGACTTTGTAGCACAGTCACTGGCCTCAGGTACTGTGGAAGAATGAGAGAATATAAATCTCTTCTTTATATTGcacttttggaaaaaaaaaaaaagagaagtacGGAATTCTGGGcttgaaattaacaaaaaaataaagactgatcTAGGAATATTCCTAAATAATGGTGATCTCTGTATAAGGGCGAATGTTGTCCACTCAAATGTCTCTTCAATTTTATTTCTCGCATCAGAAAACTTACCAGGAATCATAGCTTGTGCctttgaaagtaaaatgtttaaagctCAAGTGTCCCGCAATCAAGTTttatctgaaatattttttttgttgtggttaaaaaaaaggtttttcaCCTTGTGATCGGTGCTATCACACTGTTTGAGATGTGACGATACACTGAATGTTACTGCTTGTGTCATTGGGAATCATTTTGTAGATGGGGACCTAGTCTCACAAGCGTAAACTGAC

Function

GO: NA

KEGG:

id description
K08958 CSNK1G; casein kinase 1, gamma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196965 lncRNA downstream 527710 16865098 ~ 16922863 (-) True G156378
TU196921 lncRNA downstream 769801 16669801 ~ 16680772 (-) False G156341
TU196924 lncRNA downstream 774526 16674798 ~ 16676047 (-) True G156344
TU196920 lncRNA downstream 779186 16651540 ~ 16671387 (-) True G156341
TU196787 lncRNA downstream 1379045 16066669 ~ 16071528 (-) True G156228
TU197318 lncRNA upstream 663486 18132329 ~ 18137505 (-) True G156668
TU197320 lncRNA upstream 669676 18138519 ~ 18144775 (-) True G156670
TU197358 lncRNA upstream 964763 18433606 ~ 18434245 (-) True G156696
TU197382 lncRNA upstream 1063219 18532062 ~ 18532447 (-) True G156716
TU197383 lncRNA upstream 1064340 18533183 ~ 18538243 (-) True G156717
AMCG00006123 mRNA downstream 7742 17424838 ~ 17442831 (-) True AMCG00006123
AMCG00006122 mRNA downstream 168974 17273785 ~ 17281599 (-) True AMCG00006122
AMCG00006121 mRNA downstream 224688 17187308 ~ 17225885 (-) True AMCG00006121
AMCG00006152 mRNA downstream 355925 17083964 ~ 17094648 (-) True AMCG00006152
AMCG00006153 mRNA downstream 398821 17036827 ~ 17051752 (-) True AMCG00006153
AMCG00006137 mRNA upstream 52981 17521824 ~ 17523344 (-) True AMCG00006137
AMCG00006157 mRNA upstream 75663 17544506 ~ 17558968 (-) True AMCG00006157
AMCG00006155 mRNA upstream 98853 17567696 ~ 17587595 (-) True AMCG00006155
AMCG00006154 mRNA upstream 128879 17597722 ~ 17612378 (-) True AMCG00006154
AMCG00006156 mRNA upstream 152040 17620883 ~ 17638982 (-) True AMCG00006156
TU196984 other downstream 500456 16947997 ~ 16950117 (-) False AMCG00006127
TU196919 other downstream 779186 16669801 ~ 16671387 (-) False G156341
TU196884 other downstream 932462 16505593 ~ 16518111 (-) False AMCG00006118
TU196870 other downstream 988414 16454369 ~ 16462159 (-) False AMCG00006083
TU196760 other downstream 1493483 15954076 ~ 15957090 (-) True G156206
TU197609 other upstream 1806357 19275200 ~ 19293820 (-) True G156907
TU197648 other upstream 1980088 19448931 ~ 19451861 (-) False AMCG00006201
TU197805 other upstream 3240956 20709799 ~ 20712216 (-) True G157059

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00030847 False 1516 mRNA 0.50 10 NC_007113.7 23048620 ~ 23077466 (+)