RNA id: AMCG00006127


Basic Information

Item Value
RNA id AMCG00006127
length 1231
RNA type mRNA
GC content 0.48
exon number 3
gene id AMCG00006127
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 16947997 ~ 16963650 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTCAGTCTCTGGCAGTGACTCAGCCGGGCAATGTCTCTGTCAAAATTGGACAGACAGCCACTATCCCCTGCAATGTTGGGAAAGAGGCTGGTAATTTTATGCACTGGTACAAGCAAATACCAGGGGAGACACCtcagtttattttcagattCCATCACTCACTCAGCACACCTGACATTTATGGCCCTGGAATCTGCTCCAGCAGGTTCACTGCAAAGGCAACAGATTCTCTGAACTATCAGTTGATAATAAACAGTGTGGAAAGCAGAGACACAGCTGTATATCACTGTTGCAACTGGATAAGTAGTGGTGTTCAGTCTCAGGCAGTGACTCAGCCAGGCAGTCTCTCTGTCAGGATTGGACAGACAGCCACTCTCCACTGCAATGTTGGGGTGGATGAGAATGGATACATGTCCTGGTTCAAGCAGACACCAGGAGAGAAGCCtcagtttattttcagattttatcaCTCACACAGCGCACCCGACGCTTATGGCACTGGATTCTCCTCCAGCAGATTCACTGCAAAGGCAACAGACTCTCTGAACTATCAGCTGCTGATCAGCAGTGTAGAAAGCAGCGACACAGCTGTGTACCACTGCGCCAACTGGAGAGACAGCGGTGACGCGGGGACCCTGCCTAAACCAACGGTGTCTATTCTCCCACCCAGCGCCGATGAACTAACCAAGGGCACTGCCACTCTGCTTTGCTTGGCGAACAGAATCTCAGTGCCTTTCGTGGACGTGTCCTGGATGGCCGATGGAAAGCAGGTGTCCACCGGTGTGGGGACGAGCGTTTCTTCCAAGGGCAGTGACGGCTTTTTCGGCGTGAGCAGCTTCCTGACGCTGCCGGTCACGGAGTGGAGCAGTGGGCCGAAGGTCTACTCTTGTGCCGTGCAGCAGACGGGCTGGCCTGACAAAGACACGGCTCAGATTCGGAAGTCTGACTGTGGAGTCTGACGACCTCTGTTTCCCCAATGAATAAAGTCAAAGTCTGCcacttcttttcatttttagcattattttgagttgtttttgtaGCGCATGAATCTTCAATTAGTCAAGCCAGCTTTAGACCATTTCCAAAGTGGACAAATGTTACGatttttacaaatgttataAAAGATTGGATTATTATACATTTGCTTTATGTCTCTTTTGACTGTGCTCTTTCTgtgtatctttttatttcttgatgCCATTctaagcaaataaaatacacgTTGATGAA

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196965 lncRNA downstream 25134 16865098 ~ 16922863 (-) True G156378
TU196921 lncRNA downstream 267225 16669801 ~ 16680772 (-) False G156341
TU196924 lncRNA downstream 271950 16674798 ~ 16676047 (-) True G156344
TU196920 lncRNA downstream 276610 16651540 ~ 16671387 (-) True G156341
TU196787 lncRNA downstream 876469 16066669 ~ 16071528 (-) True G156228
TU197318 lncRNA upstream 1168679 18132329 ~ 18137505 (-) True G156668
TU197320 lncRNA upstream 1174869 18138519 ~ 18144775 (-) True G156670
TU197358 lncRNA upstream 1469956 18433606 ~ 18434245 (-) True G156696
TU197382 lncRNA upstream 1568412 18532062 ~ 18532447 (-) True G156716
TU197383 lncRNA upstream 1569533 18533183 ~ 18538243 (-) True G156717
AMCG00006128 mRNA downstream 6860 16922895 ~ 16941137 (-) True AMCG00006128
AMCG00006126 mRNA downstream 42194 16903593 ~ 16905803 (-) True AMCG00006126
AMCG00006129 mRNA downstream 103065 16835879 ~ 16844932 (-) True AMCG00006129
AMCG00006145 mRNA downstream 198602 16722210 ~ 16749395 (-) True AMCG00006145
AMCG00006144 mRNA downstream 244072 16694712 ~ 16703925 (-) True AMCG00006144
AMCG00006132 mRNA upstream 16895 16980545 ~ 17008274 (-) True AMCG00006132
AMCG00006131 mRNA upstream 58619 17022269 ~ 17022594 (-) True AMCG00006131
AMCG00006133 mRNA upstream 59378 17023028 ~ 17028378 (-) True AMCG00006133
AMCG00006153 mRNA upstream 73177 17036827 ~ 17051752 (-) True AMCG00006153
AMCG00006152 mRNA upstream 120314 17083964 ~ 17094648 (-) True AMCG00006152
TU196919 other downstream 276610 16669801 ~ 16671387 (-) False G156341
TU196884 other downstream 429886 16505593 ~ 16518111 (-) False AMCG00006118
TU196870 other downstream 485838 16454369 ~ 16462159 (-) False AMCG00006083
TU196760 other downstream 990907 15954076 ~ 15957090 (-) True G156206
TU196604 other downstream 1456355 15489402 ~ 15491642 (-) False G156088
TU197609 other upstream 2311550 19275200 ~ 19293820 (-) True G156907
TU197648 other upstream 2485281 19448931 ~ 19451861 (-) False AMCG00006201
TU197805 other upstream 3746149 20709799 ~ 20712216 (-) True G157059

Expression Profile