RNA id: AMCG00006129


Basic Information

Item Value
RNA id AMCG00006129
length 375
RNA type mRNA
GC content 0.57
exon number 4
gene id AMCG00006129
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 16835879 ~ 16844932 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgctgtcagGGCCAGTGACCAATGCTTTCATCATGGCCGCCCCTGCCAACATGTTTGTGCCGGACAGCCGCCCCGCCGTCCCCCTGCCCTCTTTCAGCCGCCACCTGAACCCCACCGACCATGGAGAAGGCCCTGAGCTTGGGGCCGTCTGTCTGCGCTTGGGACTCAACTCTCAGGGCTCTGAAGAATCCTACTTGGAAAAGGCTGGGAAGCTTTATTCCCTCATGTGCTCCGTTACAGACAAGAGCGTGTTTGGAGATGGCGAGAACAGCAAGGTGCGTGTGtctgagctggaggaggaggtcAAGACCCTGAAGAAGATCAACAAGGACCTGTACGAGTTCTCTTCACAGCTGCTTACCAAGCCCAATTGA

Function

GO:

id name namespace
GO:0070121 Kupffer's vesicle development biological_process
GO:0007368 determination of left/right symmetry biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196921 lncRNA downstream 155107 16669801 ~ 16680772 (-) False G156341
TU196924 lncRNA downstream 159832 16674798 ~ 16676047 (-) True G156344
TU196920 lncRNA downstream 164492 16651540 ~ 16671387 (-) True G156341
TU196787 lncRNA downstream 764351 16066669 ~ 16071528 (-) True G156228
TU196784 lncRNA downstream 772807 16062733 ~ 16063072 (-) True G156225
TU196965 lncRNA upstream 20166 16865098 ~ 16922863 (-) True G156378
TU197318 lncRNA upstream 1287397 18132329 ~ 18137505 (-) True G156668
TU197320 lncRNA upstream 1293587 18138519 ~ 18144775 (-) True G156670
TU197358 lncRNA upstream 1588674 18433606 ~ 18434245 (-) True G156696
TU197382 lncRNA upstream 1687130 18532062 ~ 18532447 (-) True G156716
AMCG00006145 mRNA downstream 86484 16722210 ~ 16749395 (-) True AMCG00006145
AMCG00006144 mRNA downstream 131954 16694712 ~ 16703925 (-) True AMCG00006144
AMCG00006147 mRNA downstream 154411 16660952 ~ 16681468 (-) True AMCG00006147
AMCG00006146 mRNA downstream 174963 16648022 ~ 16660916 (-) True AMCG00006146
AMCG00006117 mRNA downstream 197913 16627973 ~ 16637966 (-) True AMCG00006117
AMCG00006126 mRNA upstream 58661 16903593 ~ 16905803 (-) True AMCG00006126
AMCG00006128 mRNA upstream 77963 16922895 ~ 16941137 (-) True AMCG00006128
AMCG00006127 mRNA upstream 103065 16947997 ~ 16963650 (-) True AMCG00006127
AMCG00006132 mRNA upstream 135613 16980545 ~ 17008274 (-) True AMCG00006132
AMCG00006131 mRNA upstream 177337 17022269 ~ 17022594 (-) True AMCG00006131
TU196919 other downstream 164492 16669801 ~ 16671387 (-) False G156341
TU196884 other downstream 317768 16505593 ~ 16518111 (-) False AMCG00006118
TU196870 other downstream 373720 16454369 ~ 16462159 (-) False AMCG00006083
TU196760 other downstream 878789 15954076 ~ 15957090 (-) True G156206
TU196604 other downstream 1344237 15489402 ~ 15491642 (-) False G156088
TU196984 other upstream 103065 16947997 ~ 16950117 (-) False AMCG00006127
TU197609 other upstream 2430268 19275200 ~ 19293820 (-) True G156907
TU197648 other upstream 2603999 19448931 ~ 19451861 (-) False AMCG00006201
TU197805 other upstream 3864867 20709799 ~ 20712216 (-) True G157059

Expression Profile