RNA id: AMCG00006132


Basic Information

Item Value
RNA id AMCG00006132
length 1005
RNA type mRNA
GC content 0.47
exon number 4
gene id AMCG00006132
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 16980545 ~ 17008274 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCGACCCTCCTTGTCTGGACGCCCGTCTGGCCTCGGCTCTGACCGGGCTGATGAGAGCCGCTCTGTGTGAGATCTGGAAGGCGGTGGGAGACACGGTGTCGCAGTACCGAGCCGAGATAACCCACAGGGATGCGGAAAACGAGGCGCTGAGACGGAGGCTGCAGGAGCTCCTGGCGGCGGGGGAGGCGGCTGTGTGTACCTGGAGCTCCGGAGCGGACGGGCCGCCTGTGAAGAGCCGAGGGGCCGGGAGGGCAGAGTGGAGCTGCGGAGCTGTCTCTGTGAAAACTTCCctggaaaatgaaataaatatccTTGATCTGAAAAAAATTTGGACAAATGGACAAAATCAAGTAAAAGTACCAAAGTTGACCACTGACCACACCAGAGCATTAATCGCTTATGCCACCAACAATGGCATGGCTGCCAAGCTCAGGATTGCAACCCAAACATCGGGAGGGAGCAGGAAGAACTATCAAgataaattcaaattcaaggcTCTGCACTTCCTGCTCACTCATGCCCTTCGTCTGATGAAGCCTGATAGGTGTCAACAAGTTTTCAGAGGAAGCCCCCATTTATTTGTGGCTAGAGAAAATGAACTGGTCCGATTTGGATATTTCACATCCACCTCACTGGAAGAAAATCGGGCAAAGAAATTTGGAAAAGAAACCGTATTCCACATTCACACCTGCAAAGCGAAACACCCAGTAGGAGaatgaGTATCAAATGACTTGGAACCTGAATTTTGCTTGTGTGCACCTTTCTCTACTGCTTGTTACAGATCCTCAATATTAGAACAtatgttttgaaagaaaaatcgAAATCTTATGCATGCCAATTACTAATTCAGCTTGACTCAGTATAGCTATATTAAGTTATACTTCCTATACCTTGGCACACAAACATGGACACATGTGTCCTCCTACATATGCATTGTCTGCTTGCATTGTTTCTGTAGCTTtggaaatctaaataaaaaaataaaacacattttaaaaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196965 lncRNA downstream 57682 16865098 ~ 16922863 (-) True G156378
TU196921 lncRNA downstream 299773 16669801 ~ 16680772 (-) False G156341
TU196924 lncRNA downstream 304498 16674798 ~ 16676047 (-) True G156344
TU196920 lncRNA downstream 309158 16651540 ~ 16671387 (-) True G156341
TU196787 lncRNA downstream 909017 16066669 ~ 16071528 (-) True G156228
TU197318 lncRNA upstream 1124055 18132329 ~ 18137505 (-) True G156668
TU197320 lncRNA upstream 1130245 18138519 ~ 18144775 (-) True G156670
TU197358 lncRNA upstream 1425332 18433606 ~ 18434245 (-) True G156696
TU197382 lncRNA upstream 1523788 18532062 ~ 18532447 (-) True G156716
TU197383 lncRNA upstream 1524909 18533183 ~ 18538243 (-) True G156717
AMCG00006127 mRNA downstream 16895 16947997 ~ 16963650 (-) True AMCG00006127
AMCG00006128 mRNA downstream 39408 16922895 ~ 16941137 (-) True AMCG00006128
AMCG00006126 mRNA downstream 74742 16903593 ~ 16905803 (-) True AMCG00006126
AMCG00006129 mRNA downstream 135613 16835879 ~ 16844932 (-) True AMCG00006129
AMCG00006145 mRNA downstream 231150 16722210 ~ 16749395 (-) True AMCG00006145
AMCG00006131 mRNA upstream 13995 17022269 ~ 17022594 (-) True AMCG00006131
AMCG00006133 mRNA upstream 14754 17023028 ~ 17028378 (-) True AMCG00006133
AMCG00006153 mRNA upstream 28553 17036827 ~ 17051752 (-) True AMCG00006153
AMCG00006152 mRNA upstream 75690 17083964 ~ 17094648 (-) True AMCG00006152
AMCG00006121 mRNA upstream 179034 17187308 ~ 17225885 (-) True AMCG00006121
TU196984 other downstream 30428 16947997 ~ 16950117 (-) False AMCG00006127
TU196919 other downstream 309158 16669801 ~ 16671387 (-) False G156341
TU196884 other downstream 462434 16505593 ~ 16518111 (-) False AMCG00006118
TU196870 other downstream 518386 16454369 ~ 16462159 (-) False AMCG00006083
TU196760 other downstream 1023455 15954076 ~ 15957090 (-) True G156206
TU197609 other upstream 2266926 19275200 ~ 19293820 (-) True G156907
TU197648 other upstream 2440657 19448931 ~ 19451861 (-) False AMCG00006201
TU197805 other upstream 3701525 20709799 ~ 20712216 (-) True G157059

Expression Profile