RNA id: AMCG00006133


Basic Information

Item Value
RNA id AMCG00006133
length 1335
RNA type mRNA
GC content 0.56
exon number 9
gene id AMCG00006133
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 17023028 ~ 17028378 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgaaagagaTTGTGGAGCTGGAAGGATGCCTCAAGGCACAGCTGGAGACattcttcaaaatGGAcctatttcaattaaaaattgcCAAGGAGCACTATGAGCAGTTAAGTATCAAGAAGGCGGCGCTGCAGGAGCCCATTCAGGCCCCAACAAACCATCGCTACAAGGCCGAGAAGGGGCTCAGACGAGCTGCGCTTTCCTATGGCTATCAGctGGATCAGCTGTTTGATATCACAGCAAAGGACACTGAGGTCATTAACAATACATACCCCAGCACCCAGAAGATAATGAAGGAGAGCATCTCTGAGCCAAACCAGGCCCAGCTCGCTGCCCCCGCTTCTGAAAGCGAGGCGCTACAGAACCCCCCAGCCGAGGAGACTGAGAAGAAACTGGATGCTGAGAACATTGACCAGAAATTCCAGTCTAGAGAAGCTCCCGGGTCTGGACGGCCCTCTACCGGCACCCTGAACCGATGCTCCGTTCTGCAGCAGTCATCCTCTGCCGCACCTTCCTCCGTAGACAGTGATGCACGGAGAGTCCCGCAGAGGAGTAGCTCCCACCGGGGGCGCAGTGAGCGTCGTTGCCGCTTCGAATGTCTGGAGCGGCGTGAATGTGGCCAGCGTGATCGCTTTGATAGGAGAAAAGCTGGAGATAAGAGAGGCCTTGTCAGGAGTGACCAGAACAGGCCCTCAGTCACCAAGAGGGGCTATAGTAAAGAGACGGAAGACCGCAGCCATGAGAGGCGCCACTGCGGCCCAGCAGACCCCCTGCCCAGAGTCGCCAGCATGACTGACCACAGAGACCAGGGCACTCGGGGGAAAGCTGGGAGTGAAGAGACAGTGAAACGGGAGGCAGTGTCCACCCCTCCTCCTGCCCCTGCCAAAGCCACCCTGAGCGAGGATGGCATGGACAAGAAGTCTAAGGCCATCATTGAGGAGTTTCTCCACATCAATGACATGAAGGAAGCCCTGCATTGTGTCCAGGAGTTGAACTTGGAGCCGCTGCTCTTTGTGTTTGTGCGCAACGGTATAGAGTCGTCATTGGAGCGCAGCAGCATTGAACGGGAATGCATGGGCCTGCTGCTCTACCAGCTGCTCAAGGCTGGTACCTTGCCCTCTGAGCAGTACAACAAAGGTGTGCTGCTGCGGCAGTCAAGTGGTGGTGAAGCGCATTTCCTGAAGGTCTCTGCTGTCATTGTGTCCAGGCTGCAGGAAATCCTGGAGGTGGCAGAAGACATGGCCATTGACATCCCTTACATCTGGCAGTACCTGGCAGAGATCATCGCACCCATGCTGCACGAGGGGGGCATTGCCATGGGCGAACTCTTCAAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196965 lncRNA downstream 100165 16865098 ~ 16922863 (-) True G156378
TU196921 lncRNA downstream 342256 16669801 ~ 16680772 (-) False G156341
TU196924 lncRNA downstream 346981 16674798 ~ 16676047 (-) True G156344
TU196920 lncRNA downstream 351641 16651540 ~ 16671387 (-) True G156341
TU196787 lncRNA downstream 951500 16066669 ~ 16071528 (-) True G156228
TU197318 lncRNA upstream 1103951 18132329 ~ 18137505 (-) True G156668
TU197320 lncRNA upstream 1110141 18138519 ~ 18144775 (-) True G156670
TU197358 lncRNA upstream 1405228 18433606 ~ 18434245 (-) True G156696
TU197382 lncRNA upstream 1503684 18532062 ~ 18532447 (-) True G156716
TU197383 lncRNA upstream 1504805 18533183 ~ 18538243 (-) True G156717
AMCG00006131 mRNA downstream 434 17022269 ~ 17022594 (-) True AMCG00006131
AMCG00006132 mRNA downstream 14754 16980545 ~ 17008274 (-) True AMCG00006132
AMCG00006127 mRNA downstream 59378 16947997 ~ 16963650 (-) True AMCG00006127
AMCG00006128 mRNA downstream 81891 16922895 ~ 16941137 (-) True AMCG00006128
AMCG00006126 mRNA downstream 117225 16903593 ~ 16905803 (-) True AMCG00006126
AMCG00006153 mRNA upstream 8449 17036827 ~ 17051752 (-) True AMCG00006153
AMCG00006152 mRNA upstream 55586 17083964 ~ 17094648 (-) True AMCG00006152
AMCG00006121 mRNA upstream 158930 17187308 ~ 17225885 (-) True AMCG00006121
AMCG00006122 mRNA upstream 245407 17273785 ~ 17281599 (-) True AMCG00006122
AMCG00006123 mRNA upstream 396460 17424838 ~ 17442831 (-) True AMCG00006123
TU196984 other downstream 72911 16947997 ~ 16950117 (-) False AMCG00006127
TU196919 other downstream 351641 16669801 ~ 16671387 (-) False G156341
TU196884 other downstream 504917 16505593 ~ 16518111 (-) False AMCG00006118
TU196870 other downstream 560869 16454369 ~ 16462159 (-) False AMCG00006083
TU196760 other downstream 1065938 15954076 ~ 15957090 (-) True G156206
TU197609 other upstream 2246822 19275200 ~ 19293820 (-) True G156907
TU197648 other upstream 2420553 19448931 ~ 19451861 (-) False AMCG00006201
TU197805 other upstream 3681421 20709799 ~ 20712216 (-) True G157059

Expression Profile