RNA id: AMCG00006134


Basic Information

Item Value
RNA id AMCG00006134
length 4748
RNA type mRNA
GC content 0.40
exon number 3
gene id AMCG00006134
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 17817521 ~ 17826232 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACGACAGGTGCATAGAAAGCGGAAGTTTCGATCATGGAAAAAGAGATGCTTCCTGATATCCTTGGAGAAACCAGAGGACTTGTTTGCCTTTCCTGGGATCTGATACTTTGAAAAGTCAGCCCTCTGTATCCCAGGTGTCTGGTCCTGTCTCTGTTTGCTGCTTGTGCTTCTCCCTCTTGTCCCTCTACATTCAGGATGGATATAGTAGTGGCCAAAGTGCTGTGCCTGCTTGGGGTCTTCCTTCTCATGCTGGCTGGTGCCCTGGTGCCAGTGCGAGTCATGCAGGTGGACTATGAGAAGGCACAACGCTCAAAGAAGATCCTGGCACTCTGCAACTCCTTCGGAGGGGGCGTCTTCTTGGCCACCTGCTTCAATGCTTTACTTCCTGCTGTGAGGCAGAAGGTGGATGAGGTTCTGAAGCTGGTCAGCATCCAGACTGATTACCCCTTGGCCGAGACCATGATGCTGCTGGGGTTTTTCCTGACGGTGTTTGTCGAGCAAGCAGTCCTGACCTTCCGCAAGGAGAAGCCCTCCTTCATCGATCTGGAGACCTTCAACGCAGGTGGCTCCGATGCCGGCAGTGACTCAGAATACGACACCCCCTTCATCGCCCAGCCCCGAGCCCTCAACGGgggccaccaccaccaccacggACACCTCAATCCTTCTGAGCTGGCGCGTGCAGGGCCCCTGCGCCTGGCCAGCTTGGTTTTCGCCCTGTCCGCACACTCCATCTTTGAGGGGTTAGCCCTGGGACTGCAGGGGGAAGGGGCCAAGCTGGCCAGTCTCTTTCTGGGAGTAGCCATCCACGAGACACTGGCTGCCGTGGCTCTGGGGGTAAGCATGGCCAAGTCTGGCCTGCCCATGAAGGATGCTGCCAAACTGGCTGTCACCGTCAGTGTCATGATCCCATTGGGCATTGGCGTGGGCATGGGCATCGAGAGGGCCCAGAACTTGGCAGGCAGCATAGCCTCTGTGGTTCTCCAAGGCCTAGCAGCTGGCACCTTTCTCTTCGTTACATTCTTCGAGATCCTGGCCCGAGAGCTGGAGGACAAGCATGACCGACTGCTCAAGGTGCTGTTTCTCGTCCTGGGCTACACCGTGCTGGCAGGCCTTGTGTTCATTAAGTGGTGAGGGTAGAGACTGCAGAGGTTAGCTCACCCAGTTAGCTCAAGAGTTTCTCTAAGAGATTTCTCTGCCAGTTTTGCTAGACCAAAGACCAAAGGAATGACCCAGCCCTCACACACCTACTCCTTAATAAACTTATTTGGACTCTGTGGCCAAATAGTTGTTGGCATCCCTTTTTAGCAGTCTGGAGCATCTTAATGATTGTTGCACCTCTACTTTACTCTTTCTCAGTTCCTGGCCTTCCATAATATACAAAAAGGAATTGCTGTTGATGAAACTTATTTTCCTCTAGGTTTATTTGGGCTATTCCCGCTATTCAATCTTCCAGTCCAGGACCCTGTTGTTATTCGAAAGGTATATAGAAGATGtgtgagaagagaagagagacgTGGCTCTTTGCAACTTTAGGTTGTGTAATtctcttttgaaatgtaaacagtAAATAGGGAGGCACCAGATAGTTCACAATTCACCTTATGCTTTATGAAACATAGTAACTGCTGGGATAATAACAAGACTGCTGCAAACTTGACTTCTGGgcatgtaaaacaaaagtcacCATTCTTGGGGCAAAGCACTTTTACTTGTACCTAACCTATGCAGTTATTTGCAGAAGTATTTTGTAAGGTAAAGATAAAAAGACTAATTAGTATTTTTCCACTTTCATGTCCAAGAGCATAGGTGAGTAAATTACTGGATTCAGCTTCTCCTTTGATCGtcagggccctgtgttttgcatgactgaaatacattaaaaagccaTGCCATGCAAAACATAAGGTATTTATCATAAAAATTGTCTAAACATTGCCTTTATtccctccccacctcccccagCTTGAGGAGTCCTTGAAAATGTAGTTTTGTGGAAAGAACTGATGAGCtgaaacatttatgtttttaaatgctttttttacaCCTTTACAGGCAGCTTTTACTATTCAAGGCCCCCCAAACCCTACTTACGAATATCAATTTATAAATGTCTGTAAAACAAGGCTGATGTTTGGTAaagtttttatatttctgttggtTTATTAATtagagattaaaataaagattgttgTGTATTTGTGGGAATTACAATACCATGGATGAATTTAGTGGggtgtataaaatgtatagataaAGAGGGATAGATTTACAAAAGCCTATAGCAGTATTTGCTGCTATAAAAATAGGTATGTGGTAGACattttggtttatgttttgtttttgttcatgtaaattattattattatttatttattggcagacacccttatccagcgGGACAGGTTACAATAACAGTACCTCCTTCTCTCCATTCAAGCCTTTTCATACTTAGCTAGACAAAaatagtgttattttattatgacatttacattgttattattatgattattacgtTTTTAGCAGGATTACCTTTATCCAAGATGACAACACTAACATACAATATtcacatatacacaatattGCAAGGGTCACAACATTACAGTCACCTTCACATTAAAGTGAATACAGTTATGGTATAAGAGAAGATTAGAGTGGTCTAAAGTTATACTGTAAATAGATGCTTCTAAAGGAGGTCAGACTGTGGAGTGGAGTTCGAATACACCAATCTTGGGCAAGAGAAGGTAGAGACATAATGAAGGGAAATGTAGATGGCAAGACTGCATATActgcatgtctatttttttttttttttggcagctCTTGAGCAATAATGGTTAGGAAAACACTGAGAGTGGTGGGTATGGAGTAGGGACGTCAATTTATTACCAACCACAATAGGAAGCCAAAGTAATCTGATGATGGTGGTatgattttaaactattttcaaaAGCCCTAGAAAAGCCTAGAAATATCTGTACGTAAGCATGTAGCTTATTCAGTGTTGTAGGTGAATGAGATTAAGGTGTAGGATGCAAAACTACAGGTGGTTATCAGAATGGCACCTGCTTTAGGCCTCAATGTGAGCTCGTCATTACAGAAGCACTTGAGAGAACTAGTATAACAGTCAAAAACTATCAAACTCAAAAGCAATTTTTACTGTTGTAAAACTGTTACTGCTAATCTGCAGTATTTCATAAATTTGATTAAtctacattttgatttgtttatttttcagttgtttccATGTCAGTTCCATGGCATATGAATTCAACAAGGCCTGTACACCAAGGATGATGCTTTAAAGATACCAAGAATCTCAAATTAgttattttggaaagaaaattagGTAGCACtagagtttaaaataaaaataaaatgtatccctAGGGTGTTTTTCCATCAGATATTCTAGTGAATATTCTAATTTGTGACTGATGACTGGATCCAAATTTTGATTAAAGCAGATGTCTAagttacatttgaaacaaatgGCTTTTTGACCCTCTTCCACAACTCTTTAGAAACCAAGCTGATTGTATGAGTGGTATAGTAACATTTACAGAATATTTATGACTACTACTGAAATAGATACAGTTTACTTGTTTcatttattacttttgtttatttagtgtttgTGGGTGGGTGTTAGAACATatctcttttaaattaaattatttatttgtaatgggaaatgttgtgttttacaatgtgttttcaTGTACTGTATTATCTTTCACCAAACAgacaaaactgtattttgtttgttgtatttgttcttgCAAATTTTGTTTCCATGTACGGTACATATAGATTTTAGTTAAATGGTTGTATTAGTCAGGAAGTGAGGCCAGGAATGCAGTTTTAGTAcattgttgtatgtttttttttttttttttttaactttatgtttaatgcagaaaaatggctTAATTGGAAATAATGCAAGTCATAATCACAGAGAAAACATGTATTGCAGAAGCAGAAAGTGGGGTGCAAGGGGGTGTGATGACAGAGTCATGAAAAGTCAATAAAAAAGACTACAATAGCCTAGAAGAGTCCTGCAATATAATCTCTTTGATATTATGAGATCCCAGATTAATTCTGAAATTCAGAATTCTACAAACACTCAGATATTTGATCCTAACTTAATGTGGTGCCATTCCTGGAAGAAAAGCAGTTTTCCACAAGGACCGCTAATTTGCTGTCTCATTGGATGAGAATagcaaataatatttatatcacACATATTGTCTGGTCTTGTCTGGCATATGTTTCTAAATCTGGATATACTGGCGATCCTCAGACTATTGCCTCTTCAGGGAATGGGTTTCTGAAATAATCAGTTGGTTACAAAGGACTTAACCCATGCTTTAGATGGAATACAAAGCCATGGTAAAACGGTCCTCTGATTTTCAGAATCTTGGATGACTTTTCATATTCTCAGCAGTGGTTAAGTACTGTTAGATTATGTTTTGTGGAATTGTTCAATAGAAGACACCCATAAATTTGAATGTGTCAATATGATACAGCTGTCCAAATCACATTGCTTCCAGTAGGTCTACAATGTCTATGGAAAAGCAGCTCTGCTGTCTTATCCGAGAGaactgcattcatctttccgaTTATGCTATAGCTGTGATGTTTATAAACAAGCAGGTGGATTGGCAGAGAAAATTTCAAGGATGTtggtatctgtgtgtgtctgtgtatgtgtgtgtctatattttaactgtttacaTCGCTC

Function

GO: NA

KEGG:

id description
K14709 SLC39A1_2_3, ZIP1_2_3; solute carrier family 39 (zinc transporter), member 1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196965 lncRNA downstream 894658 16865098 ~ 16922863 (-) True G156378
TU196921 lncRNA downstream 1136749 16669801 ~ 16680772 (-) False G156341
TU196924 lncRNA downstream 1141474 16674798 ~ 16676047 (-) True G156344
TU196920 lncRNA downstream 1146134 16651540 ~ 16671387 (-) True G156341
TU196787 lncRNA downstream 1745993 16066669 ~ 16071528 (-) True G156228
TU197318 lncRNA upstream 306097 18132329 ~ 18137505 (-) True G156668
TU197320 lncRNA upstream 312287 18138519 ~ 18144775 (-) True G156670
TU197358 lncRNA upstream 607374 18433606 ~ 18434245 (-) True G156696
TU197382 lncRNA upstream 705830 18532062 ~ 18532447 (-) True G156716
TU197383 lncRNA upstream 706951 18533183 ~ 18538243 (-) True G156717
AMCG00006156 mRNA downstream 178539 17620883 ~ 17638982 (-) True AMCG00006156
AMCG00006154 mRNA downstream 205143 17597722 ~ 17612378 (-) True AMCG00006154
AMCG00006155 mRNA downstream 229926 17567696 ~ 17587595 (-) True AMCG00006155
AMCG00006157 mRNA downstream 258553 17544506 ~ 17558968 (-) True AMCG00006157
AMCG00006137 mRNA downstream 294177 17521824 ~ 17523344 (-) True AMCG00006137
AMCG00006135 mRNA upstream 9662 17835894 ~ 17851971 (-) True AMCG00006135
AMCG00006192 mRNA upstream 79808 17906040 ~ 17934385 (-) True AMCG00006192
AMCG00006163 mRNA upstream 158310 17984542 ~ 17998071 (-) True AMCG00006163
AMCG00006165 mRNA upstream 187575 18013807 ~ 18032169 (-) True AMCG00006165
AMCG00006140 mRNA upstream 615230 18441462 ~ 18444082 (-) True AMCG00006140
TU196984 other downstream 867404 16947997 ~ 16950117 (-) False AMCG00006127
TU196919 other downstream 1146134 16669801 ~ 16671387 (-) False G156341
TU196884 other downstream 1299410 16505593 ~ 16518111 (-) False AMCG00006118
TU196870 other downstream 1355362 16454369 ~ 16462159 (-) False AMCG00006083
TU196760 other downstream 1860431 15954076 ~ 15957090 (-) True G156206
TU197609 other upstream 1448968 19275200 ~ 19293820 (-) True G156907
TU197648 other upstream 1622699 19448931 ~ 19451861 (-) False AMCG00006201
TU197805 other upstream 2883567 20709799 ~ 20712216 (-) True G157059

Expression Profile