RNA id: AMCG00006135


Basic Information

Item Value
RNA id AMCG00006135
length 3571
RNA type mRNA
GC content 0.40
exon number 12
gene id AMCG00006135
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 17835894 ~ 17851971 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAACAAATCATCACTGATTTGTTTACCATCCCGTCGATCAACCGTTTCACCCGTTGATTGGTCGACAAATTCCGCTTTGCTGTTTTGCGCTACCCTATTGGTTAACTTCAACATCACCATGCCTTCAAAGGATTATGTAGGATTTAGCTAACTGAAACTCCGAATTTTTAAGAACATTCATACTAAAAAGCTAATCTTACATCAGTTATGCTGTTTTCATGTTATCCCTGCACACCATTTGTCTGAAATATAtcgttttgatttcttagatataatttttttgtaaattaggTTAGGTGGTAAAGTAAACCATTCACACCCGACGTGTGACGTAACGAGATACAGACGCATCCAGTGACTACGTCCTGCGAGGAAACTGCATAGAGATCCAAAGACAAGAGGTGCTCACAAACCCTACCTATTGACAGAGCTTAGCCCATCAGCCAAGAATGGCGGACACAAAACGTCTTGCATTCTCCATCATCCAGTTTCTGCATGACCAGCTGAACTCTGGAGGGCTATCCTCAGATGCACAGGAAAGTCTGGAAGTTGCAATCCAGTGTCTGGAGACAGCGTTTGGAGTTTCCACTGATGATCATAGCCTAGCAGTTACACAAACACTCCCAGAACTTTTTGCTGCAGCCACAATCAAGCCAGAGACTCCCCAGGTAATGATCAATGCCGTCCCAGACTCGCCAACAGAGGAGGAGGCAGCGGAGGCAGAGAGGCTCAAAACAGAAGGCAATGACCAGATGAAGGTAGAGAATTTCAGTGCAGCAGTTGAGTTCTATTCCAAAGCCATTGAAATCAACCCACGCAACGCAGTGTACTTCTGCAACAGGGCAGCGGCATACAGCAAACTGGGAAACTATGCTGGAGCTGTACAGGACTGTGAACAAGCAATTGCCATCGACCCCAACTACAGCAAAGCTTATGGTAGAATGGGGCTAGCTCTGGCtagtttaaataaacacacagaagcTGTGAGCTACTACAAGAAGGCTTTGGAACTCGACCCAGAAAATGAAACCTATAAGTCTAACTTGAAAATAGCAGagcagaaaatgaaagaaatgccAAGTCCAACAGGAGGAATGGGTGGAGTTGACCTGGCTGGATTACTTAGCAACCCTGGCTTTATGAACATGGCATCAAGTCTGATGAACAACCCTCAAGTACAACAAttAATGTCTGGCATGATGTCTGGAGCCTATGGATCAGTGGGAGCAACAGCAACAGGTGGAGGAGCAGGCCCTAACGATCTGTCCGGCCTTATCCAAGCagggcagcagttTGCCCAGCAGATGCAGCAGCAGAACCCAGAGCTAATCGAGCAGCTAAGGAGCCAGATCCGGAGTCGGACGCCCAGTGCCAGCAACGAAGAGCAGCCCTGACAGGCAGAGGGataaGTGTTTGTGTGCTGACTCTTGAAGACTCTTGAAGActgtccttgtttgttttttgttcaaaacCCCAATGAAAAACTCGTATTTTATCAAAAAGACATTGCATGTTGGGccccccttttttgtttttccatcccTGCTTCAAAACCAAATTTAAAAccacataagaaaaaaaaaatatgtaaatggaGGACAAGCCCCTTTTATCAAGATAGACTCCAAAAATGACCTCTGGATTCAAATGTTATTCACCTTTTACTGATATACATAATaccagttatttaaatgttgtatgtCAGTAATCCTAGCCAGTGGACTTTACAGTTGCATTCTGAATCCCTGACAGTTGGGTATTCTAACTGCAGGTCTATATGTGTAGCCTTATCCTTCAAGGTAAATGCATCCGAGTCAGGGAAAAGTGACATTTAAGTCTGCAATACTGAaggcatttatttatacaaatataaaataacaaatatgtgCAGAAATGTTGTCATCACTGGGAAATTAAATGGTGGAAACAAACTACATGTAGGTGTTGAATTCCTGTCATCCATTATCAAGGATAAAGTGCCAAGGACCTCATCTTGAAATCTGTTGAAGGGGCTCATTCTGGCTATGTGGGGGAGAGAGGTGTCTTTAAAACTGCCCATTGTGCCaaacacttctgttttgtttttgtttttcatttatttttgtctttgatttaaaAGATGATGTGAACCTCTGAGGGCTGAGATGACTACTTTGCTACAGTCCAAGGCAACACTAGTCCTTATTTTGTCAACTAAAGCCAGTGGCAGTCCGCTCTGGTCCTTGAATGCCTCAAGGTCTTCTGATTTTTATTCCAGGTGTATCCATCAAAAATCCAAAGTGGTAGCCATGGCAGATCAAAGGACACAAATCACAGTTTTACAGGTTTTATTGATTAAGTTCAGAATTAGTCAACATCAGGCTAGGCCACAAGTGATTTTCAAGTTCCCTGTCCAATTTGCCCAGAATCACCAGTttttatgaattgattaatcAATAAATCACGTGCCCAGGAATTCTGGTCCTAAAAGGCTAAAGGGTATACAGATGTTTGTTCTTCATTTATCTACATcaccaaatatttaaaatataatttcctaactgaaaataatacaatgtttctGTCTTcataaatttaattatttaaggaAGATCTATAAAACATGCTGGATTTGGCCTCCCCAGAACCGGGATTGCTATTCCTTGAAATGGACATAGTGGGACACAGTGTTAAAGACAGTGCTTCACTGACACTTGGTTAATTAAGCTTGACCAGAGCTCATCTCaacaaaaagtgtgttttcAAATGATCTCTAAATTATTGAGTTAACCAAAATGccacctgcttaattgagcAGTCTTTCCAAGTCTTTATAACTTGACGAGGTAAGTTGATTTAAAAGCTGCTGTATTACGGCTTTACAGAGCCAGGGTTGGATACCCTTGAGTTAGGGTTTAACCAGTGCTGAGCATACGGAGATCTAGAATTGCATCAAATAATTTGCTTGCCAGCATATACCTTGTTGATGTCAtcagtgtaataaaaaaaaaaaaatcatggataTCCAAACGCAGGTTATTATCTTCATGAAAATGTGCATGCAGTATATTCTTTTGATGACTACTCAGTTCACACTGTAATATGATTCAAAAATTGTACTGCATTCCTGTGTTTGaggtgcttttgaagaaaccAACAAACAGGCTGAAGgccctttttgtttatttcagtatgtttcacattaaaccaatttaataaaagtactttttttttttttttttttgtaacattttgcaCAGTAATGCATTCTTTTGTACTTCTCAAACAACTTGTGAAtgcaaatgtactgtatatggcAGGGTAGCCCACTGTTTCGCATTGAACACGTCAGACCATATCggggaattaaataaaattatgtatatcaaaatgttttaaatggtcAGCTTGACAGAATTCTGTTTTTGTCGCTGTAATACTTATTAACTTATTAGAAGCCCTTGTCATGGTATCAGTAGCCTAAAATAGATGGTGATCTGTTGACTTTGTTCTTGAGAAGGACTCACCAATTAAATACTGTTGTGAATAGAACAGCTTTACAAGCGGTAGGGTAGCACCATTTGGTTTTGTC

Function

GO: NA

KEGG:

id description
K16365 SGTA; small glutamine-rich tetratricopeptide repeat-containing protein alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196965 lncRNA downstream 913031 16865098 ~ 16922863 (-) True G156378
TU196921 lncRNA downstream 1155122 16669801 ~ 16680772 (-) False G156341
TU196924 lncRNA downstream 1159847 16674798 ~ 16676047 (-) True G156344
TU196920 lncRNA downstream 1164507 16651540 ~ 16671387 (-) True G156341
TU196787 lncRNA downstream 1764366 16066669 ~ 16071528 (-) True G156228
TU197318 lncRNA upstream 280358 18132329 ~ 18137505 (-) True G156668
TU197320 lncRNA upstream 286548 18138519 ~ 18144775 (-) True G156670
TU197358 lncRNA upstream 581635 18433606 ~ 18434245 (-) True G156696
TU197382 lncRNA upstream 680091 18532062 ~ 18532447 (-) True G156716
TU197383 lncRNA upstream 681212 18533183 ~ 18538243 (-) True G156717
AMCG00006134 mRNA downstream 9662 17817521 ~ 17826232 (-) True AMCG00006134
AMCG00006156 mRNA downstream 196912 17620883 ~ 17638982 (-) True AMCG00006156
AMCG00006154 mRNA downstream 223516 17597722 ~ 17612378 (-) True AMCG00006154
AMCG00006155 mRNA downstream 248299 17567696 ~ 17587595 (-) True AMCG00006155
AMCG00006157 mRNA downstream 276926 17544506 ~ 17558968 (-) True AMCG00006157
AMCG00006192 mRNA upstream 54069 17906040 ~ 17934385 (-) True AMCG00006192
AMCG00006163 mRNA upstream 132571 17984542 ~ 17998071 (-) True AMCG00006163
AMCG00006165 mRNA upstream 161836 18013807 ~ 18032169 (-) True AMCG00006165
AMCG00006140 mRNA upstream 589491 18441462 ~ 18444082 (-) True AMCG00006140
AMCG00006159 mRNA upstream 785526 18637497 ~ 18668381 (-) True AMCG00006159
TU196984 other downstream 885777 16947997 ~ 16950117 (-) False AMCG00006127
TU196919 other downstream 1164507 16669801 ~ 16671387 (-) False G156341
TU196884 other downstream 1317783 16505593 ~ 16518111 (-) False AMCG00006118
TU196870 other downstream 1373735 16454369 ~ 16462159 (-) False AMCG00006083
TU196760 other downstream 1878804 15954076 ~ 15957090 (-) True G156206
TU197609 other upstream 1423229 19275200 ~ 19293820 (-) True G156907
TU197648 other upstream 1596960 19448931 ~ 19451861 (-) False AMCG00006201
TU197805 other upstream 2857828 20709799 ~ 20712216 (-) True G157059

Expression Profile