RNA id: AMCG00006140


Basic Information

Item Value
RNA id AMCG00006140
length 1719
RNA type mRNA
GC content 0.49
exon number 4
gene id AMCG00006140
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 18441462 ~ 18444082 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAATAACTAATATTGAATGTTCTTTTTGAATTCCGAAAggattgcattgcattgcacgttcgtgttttggttttctttttttatcattttctaGTTGTCTTGCTTGAAAGACGGCCTAACGATCGCTTGCCAGGGTATTCCACAGTATTCGAAATTCACGCAAACAGAAAAGTCCGGGGGATTTCTCTGAAGAGAAGGGGTTGCCAGCCCCACGTGGGCGCAGATCGCTTGTCCAATGACTGCAAAGGGTGAAAATTCTATTGAATATCGCtgaccaataaaataaaacacttccaCGACAGGCCACGCCCACGTCGAATGTACTTAAATACCTAGCGGGAGCGGACTGCGCCGCAGAAACCGACAGGAGATCACACAGAGTACACCAAGTGCAGCAGCGACTACAGGACTTGATACGTTGCACAACTGTGGAATCGCTCATTTCGAAACCTGAACGAAGTGTTTGGATTATACTCCTTCTACTGTGCCTATCAGATCGATTGTGGGATTTTATTTTGGATTGTATCCAAACCTTGTGGATTATAACCTTTTTCAACATGACTCTGGAAGAAGTCGTTGGATGCAATATCGCAGACAAAAAGATGAAAACGGTAGCCCAAGCTCTAGAAGAACTGCTGGTGACCGCTCAAAGACAAGACTCCCTCACCATTGGAGTCTATGAGTCTGCAAAACTAATGAACATAGATCCTGACAGCGTTGTGCTGTGCGTACTGGCAACCGACGAAGAAGACGAGGATGATATCGCTTTGCAGATCCACTTCACTCTCATACAAGCCTTCTGCTGCGACAACGACATAAACATCCTGCGCGTCTCCGGCATGCAGAGGCTGGCGCAAGTCCTGGGCGAGCAGGGCACGGACAGTAACGCCAACGAGCCCAAAGACCTGCACTGCATCCTGGTCACGAATCCGCATACAGACTCGATGAAAAGCCAGGCCCTGAAGCAGGTCGGAAGCTACTGCGAGGAGAGCCGCTGCAAAAACCAGTGGGTCCCCTTCCTGGCGCTGCAGGAGCGCTGAAGACGGCTGCGAGAACGCGAAACCGACAAATGAGAATAAAAGCGTCAGTCATGGTggaaaaaaccaacacaaattcAAGATAAAATAACCTTACGGCCCCGGCTGGCAACCGTGAAGGAGCTGGGAGTTGGAAAGAAGGTTGAAGGGACAGTGCAGCCCCGCCTCCCCCACATCCACCCCCCGCGCAACGGAACAGCCCGGCGGGGGTTGCTGGAAAGTCGGCCGTCGGGCAGTGACGGAGTGTCGCCGTGGTCTGACGGGCGGAGAGGACAGAGCCTCGGAGCCGAGGGCGGCGTGGGGGCAGCCTGCCAGTTTTACACTGTGGGGGGGAAACTGTTCTGACCAATGCTGAGCCTGTTACATTGGGGAGAGGGAAAACCACCCCCCTTACATGGTCGAAACGAACGGTTCATACTGTTAGGAAATGTAAATGACTAGTATTCTAACCGTCAAATGATTTGAAcaagcattttatatttttttcgaGCAATGAAAAATGAGCTGCTTTACAGTTTGGACTGCAAGGGACTTGTTTTCAGTCACTACCTGaagcagtacattttatttttactgtccCTGGGTTTAAGGACTTTCCCATGGGGTAGTGCAAGATGTGCTTCGAAGTTTTATGAtgaaagaataatatatttgtgtgttttttatttatgaaattgtTATA

Function

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0006950 response to stress biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K04402 GADD45; growth arrest and DNA-damage-inducible protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197358 lncRNA downstream 7217 18433606 ~ 18434245 (-) True G156696
TU197320 lncRNA downstream 296687 18138519 ~ 18144775 (-) True G156670
TU197318 lncRNA downstream 303957 18132329 ~ 18137505 (-) True G156668
TU196965 lncRNA downstream 1518599 16865098 ~ 16922863 (-) True G156378
TU196921 lncRNA downstream 1760690 16669801 ~ 16680772 (-) False G156341
TU197382 lncRNA upstream 87980 18532062 ~ 18532447 (-) True G156716
TU197383 lncRNA upstream 89101 18533183 ~ 18538243 (-) True G156717
TU197464 lncRNA upstream 297269 18741351 ~ 18742209 (-) True G156791
TU197489 lncRNA upstream 396719 18840801 ~ 18843916 (-) True G156812
TU197529 lncRNA upstream 511641 18955723 ~ 18956035 (-) True G156846
AMCG00006165 mRNA downstream 409293 18013807 ~ 18032169 (-) True AMCG00006165
AMCG00006163 mRNA downstream 443391 17984542 ~ 17998071 (-) True AMCG00006163
AMCG00006192 mRNA downstream 507077 17906040 ~ 17934385 (-) True AMCG00006192
AMCG00006135 mRNA downstream 589491 17835894 ~ 17851971 (-) True AMCG00006135
AMCG00006134 mRNA downstream 615230 17817521 ~ 17826232 (-) True AMCG00006134
AMCG00006159 mRNA upstream 193415 18637497 ~ 18668381 (-) True AMCG00006159
AMCG00006158 mRNA upstream 305752 18749834 ~ 18762648 (-) True AMCG00006158
AMCG00006160 mRNA upstream 330843 18774925 ~ 18780393 (-) True AMCG00006160
AMCG00006171 mRNA upstream 370335 18814417 ~ 18821406 (-) True AMCG00006171
AMCG00006172 mRNA upstream 389248 18833330 ~ 18852079 (-) True AMCG00006172
TU196984 other downstream 1491345 16947997 ~ 16950117 (-) False AMCG00006127
TU196919 other downstream 1770075 16669801 ~ 16671387 (-) False G156341
TU196884 other downstream 1923351 16505593 ~ 16518111 (-) False AMCG00006118
TU196870 other downstream 1979303 16454369 ~ 16462159 (-) False AMCG00006083
TU196760 other downstream 2484372 15954076 ~ 15957090 (-) True G156206
TU197609 other upstream 831118 19275200 ~ 19293820 (-) True G156907
TU197648 other upstream 1004849 19448931 ~ 19451861 (-) False AMCG00006201
TU197805 other upstream 2265717 20709799 ~ 20712216 (-) True G157059

Expression Profile