RNA id: AMCG00006143



Basic Information


Item Value
RNA id AMCG00006143
length 621
RNA type mRNA
GC content 0.59
exon number 4
gene id AMCG00006143
representative True

Chromosome Information


Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 16723292 ~ 16731231 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAGGGATTTAAGAGTTGGGCAGAGTCCTAGAGTCTGCAGTCCTAGAGGAATTGAGTTTGAAGTTACCAGTCCAGttgttgtggAAGAGCTAATCGTGATGTTACGTGCTGGGGTTAAAGAGGAAGGGGAAGAcgtggtggaggaggaggtggggagTGGAGTGGGCGTGGTAGGACCCCCATTCTCACAAACCCGCAGTGCCAAGACCCTTGCCAAtcctcctcctgcccctccCACCCCTactcctccacctcctgctcctcctccaccacccccaCCTTCAGGTGTGGCTCGTGCCAGAAGCCGCCTGGTGTTGAGTGTCTCCAGGTTGAAATGGACCCGCTTGTTGTCCTTGGTCTCCTTGGTGCCCTCGCCTCGCTCGTTGTTCCACTTGGCTGGGgcagaaacagcagcagcagtagcagcaacTGGGGCAGCCGGGGTACTTGAACTTCTGTCTCCGGCGGATGTGGGGCAGGATGAGGCGGTAGAAGGCATGCTCCCCGACCAGCGTGAGCAGGGCCCCTGCCACCCCCACGCTgagcaacacaaacagcccgGAGAAATGACGAATCCCCATCTGCAGAGTCTGCGCAAGGGAAAGAGAGGAACACTGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU196904 lncRNA upstream 78443 16644447 ~ 16644849 (+) True G156329
TU196901 lncRNA upstream 95579 16625558 ~ 16627713 (+) True G156326
TU196896 lncRNA upstream 123434 16599532 ~ 16599858 (+) True G156321
TU196875 lncRNA upstream 218086 16504770 ~ 16505206 (+) True G156302
TU196847 lncRNA upstream 255616 16464008 ~ 16467676 (+) True G156279
TU197030 lncRNA downstream 428346 17159577 ~ 17171780 (+) True G156430
TU197041 lncRNA downstream 601305 17332536 ~ 17342156 (+) True G156440
TU197127 lncRNA downstream 792003 17523234 ~ 17524750 (+) True G156506
TU197131 lncRNA downstream 804400 17535631 ~ 17547361 (+) True G156509
TU197144 lncRNA downstream 836328 17567559 ~ 17571532 (+) True G156521
AMCG00006142 mRNA upstream 932 16707608 ~ 16722360 (+) True AMCG00006142
AMCG00006148 mRNA upstream 26419 16691581 ~ 16696873 (+) True AMCG00006148
AMCG00006141 mRNA upstream 42740 16674786 ~ 16680552 (+) True AMCG00006141
AMCG00006089 mRNA upstream 578054 16123128 ~ 16145238 (+) True AMCG00006089
AMCG00006088 mRNA upstream 602389 16104381 ~ 16120903 (+) True AMCG00006088
AMCG00006125 mRNA downstream 177285 16908516 ~ 16917980 (+) True AMCG00006125
AMCG00006130 mRNA downstream 338809 17070040 ~ 17076264 (+) True AMCG00006130
AMCG00006151 mRNA downstream 364451 17095682 ~ 17101861 (+) True AMCG00006151
AMCG00006150 mRNA downstream 373106 17104337 ~ 17121505 (+) True AMCG00006150
AMCG00006149 mRNA downstream 392017 17123248 ~ 17127633 (+) True AMCG00006149
TU196902 other upstream 94110 16627793 ~ 16629182 (+) True G156327
TU196796 other upstream 578669 16140544 ~ 16144623 (+) False AMCG00006089
TU196781 other upstream 663462 16054035 ~ 16059830 (+) False AMCG00006113
TU196746 other upstream 750286 15964433 ~ 15973006 (+) False AMCG00006107
TU196591 other upstream 1138531 15578084 ~ 15584761 (+) True AMCG00006065
TU197026 other downstream 391974 17123205 ~ 17127554 (+) False AMCG00006149
TU197282 other downstream 1242510 17973741 ~ 17980637 (+) False G156640
TU197332 other downstream 1458993 18190224 ~ 18356589 (+) True AMCG00006138
TU197362 other downstream 1746897 18478128 ~ 18480087 (+) True AMCG00006174

Expression Profile