RNA id: AMCG00006147


Basic Information

Item Value
RNA id AMCG00006147
length 1014
RNA type mRNA
GC content 0.52
exon number 10
gene id AMCG00006147
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 16660952 ~ 16681468 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCTTCTATGACCCCAAGTGTACCAATTGGAAAAAGAATCATGCCGTGGTCTTGGTTGGATTTGCTGGGGCACCAGCTGGGGAGAAAACGGCTACCTTCGTCTGGCCAAGGACAAAGGCGACGAATAGCTCCTGCAACACTGAAGGCCCAGCAGCACCCACATTAGCCCTGGgagggaaagaaatgaaaacactaGTGGCCCGGTTCCTGTGCTCTGTTCCCCTCGCCTGGGCAGCTGCCCAGTCCTCCTCAGTGTACCCAAAAGAAGCCTGCAGCCTGAGGGAAGTTTTAGAGGAGCACTTCATATGGCAGGCTCTGGAAGATGCTCTGGTCACCATTGGGCCTTTCGCAATCACCATTGATGCAACAACCCGCAATTTCCAGTTTTACCAGAATGGAGTCTTCTATGACCCCCAGTGTACCACCTGGAAACAGAATCATGCCATGGTCTTGGTTGGATTTGGTACTGCAGGAACTGACAATTACTGGATCATCAAGAACAGCTGGGGCACCGGCTGGGGAGAAAACGGCTACCTTCGTCTGGCCAAGGACAAAGGCGACGAATGTGGCATTAGCCAGAATGGAGTCATCCCATTGAACATTAAAGCTGTCTATGTCGTGGTCTCCGTGGTTCTCTACATCAATGTGGTCACCTGCCTGGACCCTCAGCTGGATTCTGAGTGGGAGAACTGGAGTATCAAATTCCAGAAACCTAAGACGAGGGTGACCATGTCCAGGGCAAACACGAGAAGCAACAATCAGCTGACGGCTGAAGAGCTTCGTGACGCGGCCAGCAAACTGAACGTCACAAGTATTGATTACAGGACCCTGGGATACATCACTCCAATTGAGGATCAGCTAGGTCCTAACAGGTTGCTTTCCGGCTTGTGTGGGTCCTGCTGGCCCTATAGTGCTGCAGGACCTCTGGAAGTCCAGTGGATGAAGAAGACAAACAAACCGATACCTCTGAGCAAACAGCAGCTGATGGACTGCACTTTGACTGAACTCTGGAAA

Function

GO:

id name namespace
GO:0008233 peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196787 lncRNA downstream 589424 16066669 ~ 16071528 (-) True G156228
TU196784 lncRNA downstream 597880 16062733 ~ 16063072 (-) True G156225
TU196762 lncRNA downstream 660913 15994787 ~ 16000039 (-) True G156207
TU196754 lncRNA downstream 713425 15947208 ~ 15947527 (-) True G156203
TU196640 lncRNA downstream 1045165 15615562 ~ 15615787 (-) True G156113
TU196965 lncRNA upstream 183630 16865098 ~ 16922863 (-) True G156378
TU197318 lncRNA upstream 1450861 18132329 ~ 18137505 (-) True G156668
TU197320 lncRNA upstream 1457051 18138519 ~ 18144775 (-) True G156670
TU197358 lncRNA upstream 1752138 18433606 ~ 18434245 (-) True G156696
TU197382 lncRNA upstream 1850594 18532062 ~ 18532447 (-) True G156716
AMCG00006146 mRNA downstream 36 16648022 ~ 16660916 (-) True AMCG00006146
AMCG00006117 mRNA downstream 22986 16627973 ~ 16637966 (-) True AMCG00006117
AMCG00006120 mRNA downstream 94795 16528222 ~ 16566157 (-) True AMCG00006120
AMCG00006118 mRNA downstream 139263 16505364 ~ 16521689 (-) True AMCG00006118
AMCG00006119 mRNA downstream 160374 16498652 ~ 16500578 (-) True AMCG00006119
AMCG00006144 mRNA upstream 13244 16694712 ~ 16703925 (-) True AMCG00006144
AMCG00006145 mRNA upstream 40742 16722210 ~ 16749395 (-) True AMCG00006145
AMCG00006129 mRNA upstream 154411 16835879 ~ 16844932 (-) True AMCG00006129
AMCG00006126 mRNA upstream 222125 16903593 ~ 16905803 (-) True AMCG00006126
AMCG00006128 mRNA upstream 241427 16922895 ~ 16941137 (-) True AMCG00006128
TU196884 other downstream 142841 16505593 ~ 16518111 (-) False AMCG00006118
TU196870 other downstream 198793 16454369 ~ 16462159 (-) False AMCG00006083
TU196760 other downstream 703862 15954076 ~ 15957090 (-) True G156206
TU196604 other downstream 1169310 15489402 ~ 15491642 (-) False G156088
TU196602 other downstream 1224086 15433432 ~ 15436866 (-) True G156088
TU196984 other upstream 266529 16947997 ~ 16950117 (-) False AMCG00006127
TU197609 other upstream 2593732 19275200 ~ 19293820 (-) True G156907
TU197648 other upstream 2767463 19448931 ~ 19451861 (-) False AMCG00006201
TU197805 other upstream 4028331 20709799 ~ 20712216 (-) True G157059

Expression Profile