RNA id: AMCG00006160


Basic Information

Item Value
RNA id AMCG00006160
length 402
RNA type mRNA
GC content 0.50
exon number 4
gene id AMCG00006160
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 18774925 ~ 18780393 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGATTTGGGAGAAATGGCTTCAGGTCCACCTGGAGCTAAAATGGCAAACATTACTGCACTTCGAGAGGCAGTGCACAGTGCAGGTGAAATTGGAGCTGGGGCATCGGGCACAGCTACGAAAGAAGCCCACATCAGAGGGGTTTACTCACGACTGGATGGTATTTGTGCGGGGGCCTGAGGTGTGTGACATCCAGCATTTTGTGGAGAAAGTGGTCTTCAGGCTGCACGAGAGCTTCCCCAAGCCCAAGAGAGTTTGTAAGGAACCCCCGTACAAAGTGGAAGAGTCTGGTTATGCTGGCTTTCTCATGCCCATTGAAGTCTACTTCAAGAACAAGCCTGCGAGAGGGGAATCTTTCAACCATAGCACCTATAGCACCAACTATAGcagtaaattgtaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K15187 MLLT1_3, ENL, AF9; YEATS domain-containing protein 1/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197464 lncRNA downstream 32716 18741351 ~ 18742209 (-) True G156791
TU197383 lncRNA downstream 236682 18533183 ~ 18538243 (-) True G156717
TU197382 lncRNA downstream 242478 18532062 ~ 18532447 (-) True G156716
TU197358 lncRNA downstream 340680 18433606 ~ 18434245 (-) True G156696
TU197320 lncRNA downstream 630150 18138519 ~ 18144775 (-) True G156670
TU197489 lncRNA upstream 60408 18840801 ~ 18843916 (-) True G156812
TU197529 lncRNA upstream 175330 18955723 ~ 18956035 (-) True G156846
TU197530 lncRNA upstream 175710 18956103 ~ 18956315 (-) True G156847
TU197547 lncRNA upstream 251737 19032130 ~ 19032334 (-) True G156862
TU197633 lncRNA upstream 609684 19390077 ~ 19390399 (-) True G156929
AMCG00006158 mRNA downstream 12277 18749834 ~ 18762648 (-) True AMCG00006158
AMCG00006159 mRNA downstream 106544 18637497 ~ 18668381 (-) True AMCG00006159
AMCG00006140 mRNA downstream 330843 18441462 ~ 18444082 (-) True AMCG00006140
AMCG00006165 mRNA downstream 742756 18013807 ~ 18032169 (-) True AMCG00006165
AMCG00006163 mRNA downstream 776854 17984542 ~ 17998071 (-) True AMCG00006163
AMCG00006171 mRNA upstream 34024 18814417 ~ 18821406 (-) True AMCG00006171
AMCG00006172 mRNA upstream 52937 18833330 ~ 18852079 (-) True AMCG00006172
AMCG00006161 mRNA upstream 73300 18853693 ~ 18887143 (-) True AMCG00006161
AMCG00006166 mRNA upstream 300646 19081039 ~ 19116587 (-) True AMCG00006166
AMCG00006184 mRNA upstream 458972 19239365 ~ 19269061 (-) True AMCG00006184
TU196984 other downstream 1824808 16947997 ~ 16950117 (-) False AMCG00006127
TU196919 other downstream 2103538 16669801 ~ 16671387 (-) False G156341
TU196884 other downstream 2256814 16505593 ~ 16518111 (-) False AMCG00006118
TU196870 other downstream 2312766 16454369 ~ 16462159 (-) False AMCG00006083
TU196760 other downstream 2817835 15954076 ~ 15957090 (-) True G156206
TU197609 other upstream 494807 19275200 ~ 19293820 (-) True G156907
TU197648 other upstream 668538 19448931 ~ 19451861 (-) False AMCG00006201
TU197805 other upstream 1929406 20709799 ~ 20712216 (-) True G157059

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU2528783 True 822 TUCP 0.57 6 NC_050570.1 20073489 ~ 20083584 (-)